Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq908 131 1e-25 seq3696 127 1e-24 seq4994 109 4e-19 seq4010 109 4e-19 seq3265 95.1 8e-15 >seq908 Length=47660 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 35359 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 35418 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 35419 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 35453 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 37884 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 37943 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 37944 GCCGGTATTTAGCCTTA 37960 >seq3696 Length=222198 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 11880 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 11821 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 11820 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 11786 >seq4994 Length=820280 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||||||| ||||||| |||| || ||||| || Sbjct 62398 AAGCCCATTCCCTTGGCTGTGGTTTCGCTAAATAGTAGGAAGGGACAGTGGGAATCTTGT 62339 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| |||||||||||||||||||||||||||| Sbjct 62338 TCATCTATTCATGCGCGTCACTAATTAGATGACGA 62304 >seq4010 Length=469592 Score = 109 bits (120), Expect = 4e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 ||||| || || || ||||| ||||||||| | || | ||||||||||||||||| Sbjct 111438 TTCGGCTGTGAGCTGGGCGCCCAGACGCAGCTGGACTCCCGGAACGAGCGCTTCATCGTG 111379 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTT 6452 ||||| ||||| | | ||||||||||||| | || ||||| || || |||||||| Sbjct 111378 AACGGGTCGCACCAGGCCAACAAGCTGCAGGACATGCTGGACGGGTTCATACGCAAGTTC 111319 Query 6453 GTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 ||||| || | || || || ||||| ||||| || || Sbjct 111318 GTGCTCTGCCCCGAGTGTGACAACCCCGAGACTGATCT 111281 >seq3265 Length=3642130 Score = 95.1 bits (104), Expect = 8e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 ||||| || | ||| || || || | || |||||||| ||||||||| || || || Sbjct 1211695 CCGACCAAGTTTTTTGGTTGTGAGTTGGGGGCTCAGACCCAGTTTGATTCTAAGAATGAC 1211754 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || | ||| || || ||||| || | | ||||||||| ||| | || || || ||| Sbjct 1211755 CGTTACATTGTCAATGGATCCCACGAGGCCAACAAGCTGCAAGACATGCTGGATGGATTT 1211814 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || || || ||||||||||||| || || ||||| ||||| || || || Sbjct 1211815 ATCCGGAAATTTGTGCTGTGTCCAGAGTGTGATAATCCGGAAACAGATCT 1211864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334918971801365