Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5361 95.1 2e-14 seq3182 82.4 1e-10 >seq5361 Length=1636355 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33159 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 33218 ||||| ||||||||||| |||||||||| ||||| || ||||| |||||||||||| | Sbjct 1219745 ACTTCCTCCACTGTCCAGAATGATGCCTGTGCCTGCTTGTACATCTTCCAGATGTCAGGG 1219686 Query 33219 TATTGAATTGGAAAAATAACAAATCTATTTGGATTTT-TTGCAAGGATTGGTTC 33271 || || || || ||||| ||||| | ||||||||| || ||| | |||||| Sbjct 1219685 TACTGGATAGGGAAAATGACAAACCGTCTTGGATTTTCTTTCAA-TAGTGGTTC 1219633 >seq3182 Length=3053334 Score = 82.4 bits (90), Expect = 1e-10 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCT-TCTTG--AGACATAACTCCCATTT 32370 ||||||||||| ||||||| | || ||| ||| | || ||||||||| ||||| Sbjct 792138 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 792079 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 ||||||| || || |||||||| ||||| || || || || || || | || || || | Sbjct 792078 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 792019 Query 32431 CCATGAAATCGAATGGATT 32449 ||||||| || || || || Sbjct 792018 CCATGAAGTCAAAGGGGTT 792000 Score = 82.4 bits (90), Expect = 1e-10 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 32314 TTTAAAAGTCAACATCTAGAGAAAAATGATTGTCT-TCTTG--AGACATAACTCCCATTT 32370 ||||||||||| ||||||| | || ||| ||| | || ||||||||| ||||| Sbjct 885330 TTTAAAAGTCAGCATCTAGCGTGAAGGTATTATCTGTGGTGCCAGACATAACACCCATCC 885271 Query 32371 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTT 32430 ||||||| || || |||||||| ||||| || || || || || || | || || || | Sbjct 885270 TTTGGTACTCTCCTACACGTTTCTCGAAGAAGTTGGTCTTGCCCTCCAGCGAGATGTTCT 885211 Query 32431 CCATGAAATCGAATGGATT 32449 ||||||| || || || || Sbjct 885210 CCATGAAGTCAAAGGGGTT 885192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633577230434000