Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5865 98.7 9e-16 >seq5865 Length=143300 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||| | Sbjct 25576 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25517 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||||||||| ||||| || ||||| Sbjct 25516 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 25457 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | ||||||| |||||| || ||| ||||| Sbjct 25456 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAAC 25397 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | ||||| | || ||||| || Sbjct 25396 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCCTTAGAGGGGG 25350 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || |||||| | Sbjct 26260 ATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 26201 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||||||||| ||||| || ||||| Sbjct 26200 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 26141 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | ||||||| ||||| || ||| ||||| Sbjct 26140 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 26081 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | || || | || || ||||| Sbjct 26080 ATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGG 26034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||| | Sbjct 25804 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25745 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||||||||| ||||| || ||||| Sbjct 25744 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 25685 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | ||||||| ||||| || ||| ||||| Sbjct 25684 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 25625 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | || || | || || ||||| Sbjct 25624 ATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGG 25578 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||| | Sbjct 26032 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25973 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||||||||| ||||| || ||||| Sbjct 25972 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 25913 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | ||||||| || || || ||| ||||| Sbjct 25912 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCCAACCCTGTCCGACTACAAC 25853 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || || | || || | || || ||||| Sbjct 25852 ATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGG 25806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433291480605725