Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq257 114 1e-20 >seq257 Length=13053552 Score = 114 bits (126), Expect = 1e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 22212 TGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGA 22271 |||||||||||| || || || || || | || || || || |||| ||||| ||||| Sbjct 5262917 TGTAAAGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGA 5262976 Query 22272 AACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 ||| || || | || || |||| ||||| || ||||| ||||| || || || Sbjct 5262977 GCCCAGTGACACTATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCCCC 5263036 Query 22332 CGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGA 22391 || || || ||||| || || ||||| || ||||| || ||| || ||| | ||||| Sbjct 5263037 TGACCAGCAGCGTCTGATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGTACCCTATCCGA 5263096 Query 22392 TTACAACATTCAAAAAGAATCCACCATACAT 22422 |||||||| || || ||||||||| | ||| Sbjct 5263097 CTACAACATCCAGAAGGAATCCACCCTCCAT 5263127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419692626766975