Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3182 131 3e-25 seq1943 102 2e-16 seq5361 87.8 3e-12 >seq3182 Length=3053334 Score = 131 bits (144), Expect = 3e-25 Identities = 174/236 (74%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || ||||||||||| ||||| ||| | || || ||||| |||| Sbjct 791306 TGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTTTCT 791365 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| || ||| ||| ||||| || || || ||||| || || || |||||||| Sbjct 791366 GGCTGAAGAAG-AGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCAGA 791424 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 || ||||| ||||| | |||||||||||||| ||||| | ||||| |||| Sbjct 791425 GATGAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTC---AAGCACCTTGTCAACAAA 791481 Query 42885 CCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 || || |||| | | |||| || || |||| | | || || ||||| ||| ||| Sbjct 791482 CCATCAGAAGAAAC-GGTCAGGAAGATAATCATGAATGCTGTTGAGATTGAGCAGG 791536 Score = 131 bits (144), Expect = 3e-25 Identities = 174/236 (74%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || ||||||||||| ||||| ||| | || || ||||| |||| Sbjct 884521 TGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCATCCATTTTCT 884580 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| || ||| ||| ||||| || || || ||||| || || || |||||||| Sbjct 884581 GGCTGAAGAAG-AGGGGTCTTATGCCTGGCCTTACTTTCTCCAATGAGCTTATCAGCAGA 884639 Query 42825 GACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG 42884 || ||||| ||||| | |||||||||||||| ||||| | ||||| |||| Sbjct 884640 GATGAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTC---AAGCACCTTGTCAACAAA 884696 Query 42885 CCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 || || |||| | | |||| || || |||| | | || || ||||| ||| ||| Sbjct 884697 CCATCAGAAGAAAC-GGTCAGGAAGATAATCATGCATGCTGTTGAGATTGAGCAGG 884751 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| || Sbjct 792002 CCCCTTTGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAACG 792061 Query 43130 CGTCGCCGACTACCA 43144 || | || ||||| Sbjct 792062 TGTAGGAGAGTACCA 792076 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| || Sbjct 885194 CCCCTTTGACTTCATGGAGAACATCTCGCTGGAGGGCAAGACCAACTTCTTCGAGAAACG 885253 Query 43130 CGTCGCCGACTACCA 43144 || | || ||||| Sbjct 885254 TGTAGGAGAGTACCA 885268 >seq1943 Length=432286 Score = 102 bits (112), Expect = 2e-16 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| ||| | ||||||| | |||||||| ||||| || || ||||||||||| ||| Sbjct 423454 ACCTCATCCTTGCTGGTGTATTCAACAATCTCTGTGCATAGATTGCTGCACTTGATTGTG 423395 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG-AAGG 244820 || |||| ||| |||||| |||| ||||||||| || || ||||||||| |||| Sbjct 423394 CCAAGGTTCTGCTGATTGCTCTTGCGGTTGCAGGCATCTTTATAGAGCATGTAAGG 423339 >seq5361 Length=1636355 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| || || || ||| | || || ||||||||||| ||||| || |||| || Sbjct 1221540 GGGGAGAGACTTGTGGCATTTGCAGCAGTGGAGGGCATCTTTTTCTCTGGGTCCTTTGCT 1221599 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||||| ||| || ||| ||| |||||| |||||| ||| || || || || Sbjct 1221600 GCCATCTACTGGCTGAAGAAG-AGGGGTCTGATGCCTGGACTCTCCTATTCCAATGAGCT 1221658 Query 42815 CATCAGCAGGGACGA 42829 ||||| || || || Sbjct 1221659 TATCAGTAGAGATGA 1221673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944257573680400