Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2049 102 7e-17 >seq2049 Length=84106 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| || || || |||| |||| Sbjct 10031 TGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGACCC 10090 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||||||||| | ||| ||||| || || || |||||||||||| || ||||| || Sbjct 10091 ATGTCTCCCGATCGCTGGTACAGTTGGCACGACAGCTCACCGTCACACACGTAAAACTGG 10150 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGC 20412 || | | || || || || |||||||||| | || ||| || Sbjct 10151 CACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCTGC 10194 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || || | |||| |||||||| ||||| || || || |||| |||| Sbjct 9512 TGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAGACCC 9571 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 |||||||||| | ||| ||||| || || || |||||||||||| | ||||| || Sbjct 9572 ATGTCTCCCGGTCGCTGGTACAGTTGGCACGACAGCTCACCGTCACACGCGTAAAACTGG 9631 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGC 20412 || | | || || || || |||||||||| | || ||| || Sbjct 9632 CACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCTGC 9675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 20527 GTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCT 20586 |||| | ||||| |||| ||||||||||| ||||| || || |||| || |||||| Sbjct 12660 GTACTCTGCCCCGTAGTGTCTCCACTGGAAGCCGTACACTGGCCCCAGGTCTCCCTCCTC 12719 Query 20587 TCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTT 20646 || |||| | ||||| | | ||||||| |||| ||||| || |||||| ||||| Sbjct 12720 TCGGTGCTGGAAGCCGCTGCGGTCCAGGAAGTCCCGAGAGCCGTTGGCGTCCCAGATCTT 12779 Query 20647 GACTCCTGTTCT-TGAAAGCTCCCTGGAGT 20675 || || |||| || |||||| ||| || Sbjct 12780 CACGCC-CTTCTCAGACAGCTCCTTGGCGT 12808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441334648838600