Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq257 105 7e-18 seq2444 93.3 5e-14 seq3371 89.7 6e-13 seq4994 86.0 7e-12 seq3833 86.0 7e-12 >seq257 Length=13053552 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || | || || || | || || | ||||||||| ||||| Sbjct 5263114 TCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCTTCCAACTGCTTACCGGCGAAG 5263055 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | || ||| |||||| |||||| |||| || Sbjct 5263054 ATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATTTTAGCCTTGACATTC 5262995 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||| || | ||||| || | |||||||| ||||| || || ||||| || Sbjct 5262994 TCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 5262935 Query 42198 AAGATTTGCATTTTCACGCCGAA 42220 ||||| ||||| || || | ||| Sbjct 5262934 AAGATCTGCATCTTTACACTGAA 5262912 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 10069749 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCACTA 10069808 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 10069809 TACTAACGAGGATTG 10069823 >seq2444 Length=222161 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| |||||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 197610 AACAATGTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 197551 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 197550 TCACCACTATACTAACGAGGA 197530 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/92 (84%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 56988 AACGTTTATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACA 57046 || |||| | ||| ||| |||||| || | | ||| |||||| |||||||||||||||| Sbjct 187800 AAGGTTT-TAAAACATTGTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACA 187742 Query 57047 GGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||| |||||||||||||||||| |||||| Sbjct 187741 GGCGGGGATACTCACCACTATACTAACGAGGA 187710 Score = 91.5 bits (100), Expect = 2e-13 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Minus Query 56991 GTTTATGAAAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGC 57049 ||||| ||| ||| |||||| || | | ||| |||||| ||||||||||||||||||| Sbjct 188425 GTTTA--AAACATTGTTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGC 188368 Query 57050 GGACATACTCACCACTATACTACCGAGGA 57078 || |||||||||||||||||| |||||| Sbjct 188367 GGGGATACTCACCACTATACTAACGAGGA 188339 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 198276 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 198217 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 198216 TATACTAACGAGGA 198203 >seq3371 Length=3225571 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||| Sbjct 2698723 TTCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 2698664 Query 57065 TATACTACCGAGGA 57078 ||||||| |||||| Sbjct 2698663 TATACTAACGAGGA 2698650 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2701463 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2701404 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 2701403 TACTAACGAGGA 2701392 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2693151 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTATCCACTA 2693210 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 2693211 TACTAACGAGGATTG 2693225 >seq4994 Length=820280 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 812232 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 812173 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 812172 TACTAACGAGGA 812161 >seq3833 Length=6093471 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 5353894 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5353953 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 5353954 TACTAACGAGGACTG 5353968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543165846043600