Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq257 118 1e-21 seq5865 98.7 1e-15 >seq257 Length=13053552 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || ||||| || || |||||||| || | | ||| || | ||| Sbjct 5263135 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCT 5263076 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| ||||| | || || ||||||||||| || || || || ||||| || Sbjct 5263075 TCCAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 5263016 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || |||| || ||||| || | || | |||| Sbjct 5263015 TGGATTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 5262956 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAATGA 64454 ||||| |||| || || ||||| || ||||| || | | ||| Sbjct 5262955 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTTTACACTGA 5262913 >seq5865 Length=143300 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| | ||| Sbjct 25365 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 25424 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || | || ||||||||| || ||||| |||||||| || Sbjct 25425 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 25484 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | || ||||| || | || | |||| Sbjct 25485 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTC 25544 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || ||||| || ||||| Sbjct 25545 TTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25576 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 25608 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 25667 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || ||||||||| || ||||| |||||||| || || || || ||| Sbjct 25668 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTG 25727 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | |||||| || || | || Sbjct 25728 ACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTC 25787 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 25788 TTCACGAAGATCTGCAT 25804 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 26064 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 26123 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || ||||||||| || ||||| |||||||| || || || || ||| Sbjct 26124 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTG 26183 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | |||||| || || | || Sbjct 26184 ACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTC 26243 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || ||||| || Sbjct 26244 TTCACAAAGATCTGCATCTT 26263 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||| | | ||||| ||||||||||| Sbjct 25836 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTTGGACCATCTTCCAGCTGCTTGCCA 25895 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | || ||||||||| || ||||| |||||||| || || || || ||| Sbjct 25896 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTG 25955 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || ||||| || | || | |||||| || || | || Sbjct 25956 ACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGTC 26015 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 26016 TTCACGAAGATCTGCAT 26032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601611952600