Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq1950 114 4e-21 >seq1950 Length=44673 Score = 114 bits (126), Expect = 4e-21 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 32929 CCTTCTATATAAACCTGCGACCCTTTACGAAGATACTCTCCTGCAACTTCCGCAATTTTT 32988 || || || ||||| || || ||||| || || || || || |||| ||| || | ||| Sbjct 25063 CCCTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTCACCGGCAATTTCAGCTAGCTTT 25004 Query 32989 CCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTTCTTTTCTCCTGTTTGCTTGTCT 33048 || |||| | |||| || |||||||| || | |||||| | || || || | ||| ||| Sbjct 25003 CCAAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTTTTGCTCGCCAGTGTTCTTATCT 24944 Query 33049 TTCCACTGCTCAGATGTTGCAACAGAAAGGTTCGCAATTGCAGAGCCTGATGCTGAATAT 33108 ||||| || |||||||| | | || ||| |||| ||| || | | || | Sbjct 24943 TTCCAGCTTTCTGATGTTGCCAACGTAAAGTTAGCAACTGCGCCACCACTAGGTAAACAC 24884 Query 33109 TTAACTTCAGGGTCATTTCCGAGAGTGCCGACAATGATTACTTTATTTACGCCGCG 33164 ||||||||||| || || || ||| |||| | |||||| ||||||| | ||||| Sbjct 24883 TTAACTTCAGGATCGTTACCAAGATTGCCAATGATGATTGCTTTATTGATTCCGCG 24828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144029771933990