Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1943 82.4 8e-11 >seq1943 Length=432286 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| |||||| ||||||| |||||||| ||||| || || |||||| Sbjct 424876 CATGGTGTGAGGAACAGCCTGCTTCTGGCCCCAATGCCCACCGCCTCTACAGCCCAGATC 424935 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || || ||||||||||| | || || | ||| |||| | |||| | || || || Sbjct 424936 CTAGGAAACAACGAGTCCATTGAGCCATACACAAGCAACATCTACACTCGTCGAGTCCTG 424995 Query 95197 GCCGGGGAATTCC 95209 | ||||| |||| Sbjct 424996 TCTGGGGAGTTCC 425008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494680437363400