Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq257 87.8 2e-12
>seq257
Length=13053552
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || || | ||| | || | ||| | | | || ||||| || ||||||||||||
Sbjct 5263151 GCCACCACGGAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 5263092
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||||| || || | || ||||||| |||| |||||||| ||||| || ||
Sbjct 5263091 TAGGGTACGACCATCTTCCAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGG 5263032
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || |||||||| |||||| || | | || | ||||| | | ||||||
Sbjct 5263031 GATGCCCTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCCAC 5262972
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || |||||||| || || || || ||||||||
Sbjct 5262971 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 5262924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496219504318800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |