Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq5506 116 5e-21 seq6219 89.7 7e-13 >seq5506 Length=141892 Score = 116 bits (128), Expect = 5e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 8942 TTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAG 9001 || |||| || |||||| | ||| ||||| |||||||||||||| ||| | || || Sbjct 66166 TTGACGAGGTTAAAACCTGTCTGCCCACCGAATGTGCTGGGTTTCCAATACTCGGGAGAA 66107 Query 9002 CAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTC 9061 |||||| ||| ||| || |||||||| || |||||||| |||| ||| | |||||| Sbjct 66106 CAGATGGGATTCCCCAAAAGACCTTTCAAAGAGAACGGAGCTCCCATCTCCACCATGCTC 66047 Query 9062 TCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACA 9121 || || || ||||| ||||| || | || || | | | |||| ||||| || | | Sbjct 66046 TCCCCAAATATGGCCCCGGGCCGAGTCTTCTCCAGCAGCAGACCAGGGTAGAACTCCAGA 65987 Query 9122 GCCTCGACGTCGCCATAGAGGGCTTCCAACTC 9153 || |||| ||| || || || | |||| ||| Sbjct 65986 GCATCGATGTCCCCGTACAGTTCCTCCAGCTC 65955 >seq6219 Length=4626575 Score = 89.7 bits (98), Expect = 7e-13 Identities = 167/243 (69%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 9451 GTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACG 9510 ||||| || || || | ||| || ||||| | || || ||||| ||||| | || Sbjct 4457294 GTGAAGGAGTCCACCAGGTGGTTGATGCCGTGGTCGACGACAATGGAGGTGTTGAAGACA 4457235 Query 9511 AAGTGTTCGTA--ACCATACTTCGCGTCGCCT--ATGCGAAAATCATCAGGCAACAGAGA 9566 || || | ||| | | ||||| | ||| ||| | || || || |||| || | Sbjct 4457234 AACTGCTTGTAGGAGTAGACTTC----CTCCTGGATGTGGAAGTCCTCGGGCATGAGCGG 4457179 Query 9567 ATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGT 9626 ||||||| ||||||| || |||||||||| || || |||||||||||||| || | Sbjct 4457178 ATGCCAGTGGTAGAGCGTGTTGAACTCGGAGGCGATGCGGTTCTGGTACTGGAACTGTGA 4457119 Query 9627 ACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGAC 9686 ||| || | ||| |||||||| | |||| |||| ||| || || || ||||| || Sbjct 4457118 GTTGAAGAGCAGCTCTGGGTCAAACTTCAGCTTGAAGAAGTAGCCACTAAGATGCTGCAC 4457059 Query 9687 ATA 9689 || Sbjct 4457058 GTA 4457056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723665442761000