Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3182 98.7 1e-15 seq1943 95.1 1e-14 >seq3182 Length=3053334 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||| || | | ||| || ||||| ||||| || || Sbjct 791450 GCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCATTGGAGAAAGTAAGGCCA 791391 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||||| |||||||| ||||||||| | ||||||||||||||| ||||| Sbjct 791390 GGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAATGAGCCAGAGAAAAAGATG 791331 Query 127640 CCCTCCACACACGCGAACGCAA 127661 ||||||||| || || |||| Sbjct 791330 CCCTCCACAGCAGCAAAGGCAA 791309 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||| || | | ||| || ||||| ||||| || || Sbjct 884665 GCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCATTGGAGAAAGTAAGGCCA 884606 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| ||||||| |||||||| ||||||||| | ||||||||||||||| ||||| Sbjct 884605 GGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAATGAGCCAGAGAAAAAGATG 884546 Query 127640 CCCTCCACACACGCGAACGCAA 127661 ||||||||| || || |||| Sbjct 884545 CCCTCCACAGCAGCAAAGGCAA 884524 >seq1943 Length=432286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||||||||| | |||| ||||| || | ||| |||||||| ||| Sbjct 424979 TAGATGTTGCTTGTGTATGGCTCAATGGACTCGTTGTTTCCTAGGATCTGGGCTGTAGAG 424920 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || |||||||| || |||| || |||||||| Sbjct 424919 GCGGTGGGCATTGGGGCCAGAAGCAGGCTGTT 424888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613454169971400