Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1943 89.7 8e-13 >seq1943 Length=432286 Score = 89.7 bits (98), Expect = 8e-13 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| || || | ||||||| | |||||| | || || || || | ||| ||||| Sbjct 427029 CCAGCCATAAAAGTGCATGCTCGTCAGTTTTCCGTAATTAGGCTCTGCTACGTGGATGTT 426970 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 || |||||||| ||||| ||| | ||| || || || || | ||| ||||| ||||||| Sbjct 426969 GAGGGACTGGCTCTGGTCAATGTA-GGCTCCTCGGTCAGCTGACATTTTGATGATGGTCT 426911 Query 204036 TCTGCGAAATCTCCCACACCGTCTTG 204061 ||||||| ||||||||||| || ||| Sbjct 426910 TCTGCGAGATCTCCCACACAGTTTTG 426885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795086468772400