Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5865 149 1e-30 seq257 107 5e-18 >seq5865 Length=143300 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||||||||| ||||| || |||| ||||||||| | || || | ||||| Sbjct 26048 CAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 26107 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| | | ||||||||| || ||| |||||| || Sbjct 26108 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 26167 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||||| ||| || || || | ||||| || Sbjct 26168 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGT 26227 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||||||| || |||||||| || || Sbjct 26228 CTTCCCCGTGAGGGTCTTCACAAAGATCTG 26257 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| | ||| || ||||||||||| |||||||| |||| ||||||||| | || || Sbjct 25355 TCTAAGGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 25414 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||||||||| || |||||||| | | ||||||||| || ||| || Sbjct 25415 GCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCC 25474 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||| ||||| ||| ||| || | |||||| ||| || || || | Sbjct 25475 TTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAG 25534 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| || ||||| || || || Sbjct 25535 GGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTG 25573 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||||||||| ||||| || |||| ||||||||| | || || | ||||| Sbjct 25592 CAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 25651 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| | | ||||||||| || ||| |||||| || Sbjct 25652 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 25711 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||||| ||| || || || | ||||| || Sbjct 25712 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGT 25771 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||||||| || ||||| || || || Sbjct 25772 CTTCCCCGTGAGGGTCTTCACGAAGATCTG 25801 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||||||||| ||||| || |||| ||||||||| | || || ||||| Sbjct 25820 CAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTTGGACCATC 25879 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| | | ||||||||| || ||| |||||| || Sbjct 25880 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 25939 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||||| ||| || || || | ||||| || Sbjct 25940 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGT 25999 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| |||||||| || ||||| || || || Sbjct 26000 CTTCCCCGTGAGGGTCTTCACGAAGATCTG 26029 >seq257 Length=13053552 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || || ||||| |||| ||||||||| | | || | |||||| Sbjct 5263135 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCT 5263076 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| |||||||||||||| || || || ||| ||| Sbjct 5263075 TCCAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 5263016 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| || || | ||||| | | || || || | ||||| ||| Sbjct 5263015 TGGATTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 5262956 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 5262955 TTGCCAGTCAGGGTCTTCACGAAGATCTG 5262927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178817149388305