Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30]
6,915 sequences; 807,711,962 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq5865 145 9e-30
seq257 129 7e-25
>seq5865
Length=143300
Score = 145 bits (160), Expect = 9e-30
Identities = 173/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| || | ||||| ||||| || | || ||| || ||||| ||||||||||
Sbjct 26032 TGCCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 26091
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || ||||| | || || ||||||||||| ||||| ||||| | ||||||||| | |
Sbjct 26092 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGG 26151
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || || |||||| |||||| ||||| || | | |||||||| | ||||
Sbjct 26152 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCA 26211
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCA 46599
| || | |||||||| || ||||| || || || |||||||| ||||| || ||
Sbjct 26212 CCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCATCTTTCA 26266
Score = 141 bits (156), Expect = 1e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| ||||| | |||| |||||| || | || |||||| ||||| |||||||||||
Sbjct 25349 GCCCCCTCTAAGGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 25408
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485
|| ||||| | || || ||||||||||| ||||| ||||| | ||||||||| | ||
Sbjct 25409 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGG 25468
Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545
| || || |||||| |||||| ||||| || | | |||||||| | |||||
Sbjct 25469 AATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCAC 25528
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | |||||||| || ||||| || || || || ||||| |||||
Sbjct 25529 CTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25576
Score = 138 bits (152), Expect = 1e-27
Identities = 168/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| || | ||||| ||||| || | || ||| || ||||| ||||||||||
Sbjct 25576 TGCCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 25635
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || ||||| | || || ||||||||||| ||||| ||||| | ||||||||| | |
Sbjct 25636 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGG 25695
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || || |||||| |||||| ||||| || | | |||||||| | ||||
Sbjct 25696 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCA 25755
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | |||||||| || ||||| || || || || ||||| |||||
Sbjct 25756 CCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25804
Score = 129 bits (142), Expect = 7e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| || | ||||| ||||| || | || ||| || ||||| ||||||||||
Sbjct 25804 TGCCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGG 25863
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
| || || | | || || ||||||||||| ||||| ||||| | ||||||||| | |
Sbjct 25864 ACAGGGTTGGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGG 25923
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | || || |||||| |||||| ||||| || | | |||||||| | ||||
Sbjct 25924 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCA 25983
Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
| || | |||||||| || ||||| || || || || ||||| |||||
Sbjct 25984 CCTCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 26032
>seq257
Length=13053552
Score = 129 bits (142), Expect = 7e-25
Identities = 172/238 (72%), Gaps = 1/238 (0%)
Strand=Plus/Minus
Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423
||||| || | | ||| | ||| ||||| | || ||||| ||||| |||||||||
Sbjct 5263153 TTGCCACCACGGAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 5263094
Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483
||||| || || | || || | |||||| |||||||| |||| ||||||||||| |
Sbjct 5263093 GATAGGGTACGACCATCTTCCAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGG 5263034
Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543
|| | || ||| |||||| ||| || ||||| || | | ||||| || | |||
Sbjct 5263033 GGGATGCCCTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCC 5262974
Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT-TTTGCAC 46600
|| || | |||||||| ||||| ||||| || || || ||||| ||||| ||| |||
Sbjct 5262973 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATCTTTACAC 5262916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565189542205800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |