Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5865 149 6e-31 seq257 127 2e-24 seq3182 105 7e-18 >seq5865 Length=143300 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || ||||||||| | || || ||||| | | Sbjct 25576 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25517 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || |||||| | ||||| Sbjct 25516 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25458 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 25457 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCCGACTACAA 25398 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||||||||| | ||||| ||| Sbjct 25397 CATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGCCTTAGAGGGGGC 25349 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || ||||||||| | || || ||||| | | Sbjct 25804 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25745 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || |||||| | ||||| Sbjct 25744 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25686 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| |||||||| || | |||||||| ||||||||| Sbjct 25685 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 25626 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || || |||| |||||| |||| || ||| Sbjct 25625 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGC 25577 Score = 143 bits (158), Expect = 3e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || |||||||| || ||||||||| | || || ||||| Sbjct 26264 AAAGATGCAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGC 26205 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | ||||| | | | |||| | || | || |||| |||||||| || |||||| | | Sbjct 26204 AAGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAG 26146 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| || | || | ||| ||||| |||||||| || | |||||||| ||||| Sbjct 26145 ACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACT 26086 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| || || | || || || |||| |||||| |||| || ||| Sbjct 26085 ACAACATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGC 26033 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || |||||||| || ||||||||| | || || ||||| | | Sbjct 26032 ATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC 25973 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| |||||||| || |||||| | ||||| Sbjct 25972 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 25914 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| ||||| |||||||| || | | ||||| ||||||||| Sbjct 25913 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCCAACCCTGTCCGACTACAA 25854 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || || |||| |||||| |||| || ||| Sbjct 25853 CATCCAGAAAGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGAGGC 25805 >seq257 Length=13053552 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || || || ||||| ||||||||| | || || ||| | Sbjct 5262920 AAAGATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGCC 5262979 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | || | ||||||| ||||||||||| || ||| | || Sbjct 5262980 CAGTGACACTATTGAGAATGTCAAGGCTAAAATCCAGGACAAAGAGGGCATCCCCCCTGA 5263039 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| || || ||| |||| || | || ||||| |||||| Sbjct 5263040 CCAGCAGCGTCTGATCTTCGCCGGTAAGCAGTTGGAAGATGGTCGTACCCTATCCGACTA 5263099 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| |||||| | || || ||| | ||||| ||| Sbjct 5263100 CAACATCCAGAAGGAATCCACCCTCCATCTTGTGCTCCGT 5263139 >seq3182 Length=3053334 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 ||||||||||||| ||| |||||||| || |||| |||||| || ||| || || || Sbjct 791468 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 791409 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999 ||| |||||| | ||| ||||| || || | || || ||||| || |||| || || Sbjct 791408 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 791349 Query 133000 CTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCC 133052 ||| || || |||| |||||| || || || || || |||| ||||| || Sbjct 791348 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 791296 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 132880 TGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCG 132939 ||||||||||||| ||| |||||||| || |||| |||||| || ||| || || || Sbjct 884683 TGCTTGAACATCAGGCAGGCAAAGTCACAGTGCAGGCCCTCATCTCTGCTGATAAGCTCA 884624 Query 132940 TTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA 132999 ||| |||||| | ||| ||||| || || | || || ||||| || |||| || || Sbjct 884623 TTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTCTTCAGCCAGAAAATGGATGCAAAT 884564 Query 133000 CTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCC 133052 ||| || || |||| |||||| || || || || || |||| ||||| || Sbjct 884563 GAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAGGCAACCACTCGCTCACC 884511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500129566313600