Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3207 154 6e-32 >seq3207 Length=2023586 Score = 154 bits (170), Expect = 6e-32 Identities = 477/723 (66%), Gaps = 35/723 (5%) Strand=Plus/Plus Query 450895 AATGTCTGTC---AAAAAAGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGT 450951 |||||||||| |||| | || |||||||||||||||||||||| ||| ||||||||| Sbjct 1815590 AATGTCTGTCGCTAAAAGAATATCAATTGGAATTGATCTTGGAACACCCTATTCATGTGT 1815649 Query 450952 AGGTGTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTAC 451011 | | || | ||| |||| || || ||||| || || |||||||| ||| | || | Sbjct 1815650 ATGGGTATTTCAACATGGTAAAGTTGAAATAATTGCCAATGACCAGGGAAACGGGACATC 1815709 Query 451012 TCCTTCATGGGTAAGT----TTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAAAT 451067 || || | || || || || || |||| ||||| | || | || || ||| Sbjct 1815710 ACC--CA--GCTATGTGGCCTTCACAGACACAGAGAGACTAATTGGAGATGCAGCCAAA- 1815764 Query 451068 CAATGGTAAATT--CA--AATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGC 451123 || || || || || | || || || |||| |||||| |||||| | |||||| Sbjct 1815765 -AA--CCAAGTTGCCATGAACCCTAACAATACTGTATTTGATGCCAAACGTCTTATTGGC 1815821 Query 451124 CGTATGTATGATGATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTA 451183 ||| || |||||| | ||| | ||| | ||| | | ||| | | || || Sbjct 1815822 AGTAGGTTTGATGACCCCATTGTCCGGTCAGACATGAAACTTTGGCCTTTTAACGTGGTT 1815881 Query 451184 AATCAAAAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCT 451243 | | | | ||||| ||| | | ||||| | | ||||| ||||||||||| || | Sbjct 1815882 AGTGATAGTGGAAAACCCAAAGTACAAGTTGAGCACAAAGGAGAAACTAAAACCTTCTAT 1815941 Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACT-AAAATGAAAGAAACAGCAGAACAATATAT 451302 ||||| ||| | || || |||| |||| | ||||||| ||| | | | || | | Sbjct 1815942 CCTGAGGAAGTCTCCTCCATGG-TCTTGGTGAAAATGAGAGAGATTTC-GGACGCCTTCT 1815999 Query 451303 TGGTTCTCCA-GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAAC 451361 ||| | | | |||| | || || || || || || ||||| || ||||| |||| | Sbjct 1816000 TGGGACACAAGGTTAACAACGCTGTCATCACGGTCCCAGCTTACTTTAATGACTCACAGC 1816059 Query 451362 GGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATG 451421 | || ||||| | ||||||||| || ||||| |||||||| || | | || | || Sbjct 1816060 GCCAGGCAACCGAGGATGCAGGAGTCATCGCTGGACTAAATGTTTTTAGGGTCATCAGTG 1816119 Query 451422 AACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC--AGAAGaaaa 451479 | || ||||| | || ||||| || ||| |||| | ||| || ||| Sbjct 1816120 AGCCGACAGC-----CATCCGCCTATGGTCT-GGA----CAAAGGGAACAAAGGGGAACG 1816169 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGA 451539 ||| | | | ||||| |||| || || ||| |||| || || || |||| || Sbjct 1816170 CAATGTATCGATCTTTGACCTTGGAGGGGGTACTTTTGATGTGTCAGTCCTGGCAATAGA 1816229 Query 451540 AGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATAT 451599 |||||| ||||||| || || || || || || || || || || || ||||| | Sbjct 1816230 AGATGGAATATTTGAGGTGAAAGCCACAGCAGGGGACACACACCTGGGTGGGGAAGACTT 1816289 Query 451600 TGA 451602 ||| Sbjct 1816290 TGA 1816292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975543354436820