Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_015157.1 Length=125956 Score E Sequences producing significant alignments: (Bits) Value seq1950 98.7 8e-16 >seq1950 Length=44673 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 59103 TAAAGGAATTATTAAACTTACCCCAGTGGGGGAAGTTAACCATTTAGGTCAAACAGTTAC 59162 |||||| || ||||||||||| ||| ||| || ||||||||||||||||||| |||| Sbjct 32136 TAAAGGGATAATTAAACTTACACCACTGGTGGGAGTTAACCATTTAGGTCAACACGTTAA 32195 Query 59163 AATGTTACATGTAAACGAACGAGACAGTTACATTGTCGTTGCTCAGATGTCACCTGAGTT 59222 || ||||| | | | | || || ||||||||||||||| | || || ||||| Sbjct 32196 TGAGTACCATGTTGATAAGAGGAATAGCTATATTGTCGTTGCTCAGTTATCGCCAGAGTT 32255 Query 59223 TACAGCAGCTTTAGTAGAT 59241 |||||| | ||| || ||| Sbjct 32256 TACAGCGGTTTTGGTTGAT 32274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402900442073855