Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_015158.1 Length=49675 Score E Sequences producing significant alignments: (Bits) Value seq204 201 4e-47 >seq204 Length=1493 Score = 201 bits (222), Expect = 4e-47 Identities = 431/637 (68%), Gaps = 13/637 (2%) Strand=Plus/Minus Query 17412 TCAAAGTTCATAATCTTCTCTTGGAAGATACGGCCAGCGGCGTTTTGAAGTTGTTGAACC 17471 |||||| | |||| |||||||| |||||||||||||| || ||||| | ||||| Sbjct 1401 TCAAAGCTGGTAATTTTCTCTTGAAAGATACGGCCAGCAGCATTTTGCAACGACTGAACT 1342 Query 17472 TCGAATGCTGTTTTCTCACCGGGAGTACGAATACCCATAGCTTCACGAGGAGCACCTGCA 17531 ||||| ||||| |||||||| | || ||||| |||||||| ||||| || || || | Sbjct 1341 TCGAAGGCTGTCTTCTCACCTGCTGTGCGAATCCCCATAGCCTCACGTGGTGCGCCAGAG 1282 Query 17532 AACTCTTCCATCTTAGCTTCAAGAATCTGAATCTGCATATCTGCT--TGTAGAGC--TTG 17587 || |||||| || |||||||| ||| | || ||| | || || || Sbjct 1281 TACAGTTCCATTTTTTCTTCAAGAGAGCCAATTTCGTTAGACGCTGCTATAATGCCGTTC 1222 Query 17588 AGTGTTAGGAGCCATCATCTCTACATCACCATCACCATTGATGTAAATCTGTTCCATTGG 17647 || ||| | | | |||| ||||||| | | | ||| |||| | ||| Sbjct 1221 AG-GTTCTTGCCTAGCTCAGCTACGTCACCATTCTCGTCGGTGTGTATCTCAGCACCTGG 1163 Query 17648 TCCCCAAACAAACTCCTCAACATCACCTTTAACCTTCATTGGAGGAAACGCGATTAGGTC 17707 ||||| |||||||| || || ||||| |||| | || || | | | ||| Sbjct 1162 GCCCCATACAAACTCTTCTACCTCACCCTTAATGACAAGCGGTGGGTGCACACACAAGTC 1103 Query 17708 AAACACGTCAGCTTTCAAGTTCTCAAGGTGGTCGATACGATATTGCATACCTACTAGGTT 17767 | |||||||||| | ||||||||||||||| ||||| ||||||||||| || | ||| Sbjct 1102 CATTGCGTCAGCTTTAAGGTTCTCAAGGTGGTCAATACGGTATTGCATACCAACCAAGTT 1043 Query 17768 ATCTAGTGGTCCCATAGCGTACAGGTTATCTTGACGAATACGCCAACCACAATGGAAGAT 17827 || | ||||||||||| |||||||||| | || ||||||| ||| ||| | | Sbjct 1042 GTCCAAAGGTCCCATAGCCCACAGGTTATCAGGTCGTGTACGCCACCCAACATGACATAA 983 Query 17828 TGGAGCTTGTGCAAACCATGA-TGGATTCTCTTTTTCCTCGATTACAAACATGCGGTCAA 17886 || |||| |||| | || | ||| || || ||| | |||| ||||||| Sbjct 982 GGGGGCTTTACCAAAGTAAGACTTGATAGGCTCTTCCCT-AACTACATGGCAACGGTCAA 924 Query 17887 TGATTG---TGACTTTCATATTACGCTTAAATGTACCTGACTGAGTATCGTGGTAGTCAC 17943 ||||| ||||| | || ||| | | ||| | | || ||||||||| | Sbjct 923 AGATTGTTATGACT---ACGTTTGACTTCAGTTCACCAGTTTCTGTGCTGTGGTAGTCGC 867 Query 17944 CATAGAATGTCAGAACCTCAACGTAAGGACTTTGGAAGTAATCGTAAAGGTTGCCAAATC 18003 ||||||| || | ||| || || | |||| |||| ||||| ||||||||||||| Sbjct 866 CATAGAACTCAAGTATCTCTACATAGTCAGATTGGTAGTATTCGTAGAGGTTGCCAAATC 807 Query 18004 CGTCCATAGAGAAGCCTACAGCCTTTTCACAGTCTTC 18040 |||||| ||| |||| ||||||| || ||||||| Sbjct 806 CGTCCACAGAATAGCCCTCAGCCTTATCGAAGTCTTC 770 Score = 93.3 bits (102), Expect = 1e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 18450 TCCCACTTCAACCACCGTTCATTTGGAAACAATGCACTAATGTAGTTGGAGTGTAAGTTA 18509 ||||| |||||| ||||| || || | ||| | |||||||||||| | ||| Sbjct 354 TCCCAACGCAACCAGTCGTCATTAGGGAAGAGGGCAGACAAGTAGTTGGAGTGCAGGTTG 295 Query 18510 TCTCGAATCTGACACAACTTAGGTAAAGTAGTTTTGTTCTTCCACGGTAACGTGCTGTTA 18569 ||||| || || || | |||||| | || || ||||||||| || || || |||| Sbjct 294 TCTCGTATTTGGCAAAGCTTAGGGAGTGTTGTAGAGTTCTTCCAAGGCAATGTCTGGTTA 235 Query 18570 GTCGTAGTAGTGGTATCAGTAGCAAAGATGTAGTTACGTAGTTC 18613 | || || ||||| ||||| ||||||| ||||||||||| ||| Sbjct 234 GCTGTGGTTGTGGTGTCAGTGGCAAAGACGTAGTTACGTAATTC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158825356885510