Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_015293.1 Length=30651 Score E Sequences producing significant alignments: (Bits) Value seq1950 147 4e-31 >seq1950 Length=44673 Score = 147 bits (162), Expect = 4e-31 Identities = 200/279 (72%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 2003 AACAATTTCAGTGGTGTACTTTTCTTGACCTTGTTGGTCAGTCCATTTGCGGGTTTTTAA 2062 ||||||||| || ||||||| |||||||| | || || |||||| || |||| || Sbjct 25127 AACAATTTCTGTAGTGTACTGATCTTGACCATCTTTGTTTTGCCATTTACGCGTTTGCAA 25068 Query 2063 CTTGCCTTCAATGTATAGCTTACTACCCTTACGTACATACTCGCCGATTATTTCAGCTAA 2122 ||| || |||||||| | | | || || |||| || || ||| |||||||||| Sbjct 25067 CTTACCCTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTCACCGGCAATTTCAGCTAG 25008 Query 2123 CTTTCCAAAAACAACAATTCTGTGCCACTCGGTTTCTTCTTTTGGCTCGCCAGTGCTTTT 2182 ||||||||| ||| ||| | |||||| || |||| ||||||| ||||||||||| | || Sbjct 25007 CTTTCCAAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTTTTGCTCGCCAGTGTTCTT 24948 Query 2183 ATCCTTCCATTTTTCGCTAGTTGCTAGAGTTAGGTTTGCCACTGCATTTCCGTTAGGTAT 2242 ||| ||||| |||| ||||| | || | ||| || ||||| || |||||| Sbjct 24947 ATCTTTCCAGCTTTCTGATGTTGCCAACGTAAAGTTAGCAACTGCGCCACCACTAGGTAA 24888 Query 2243 GTAACGAATTTCTGGATCTTGACCAGCATTACCAATAAT 2281 | || ||| ||||| | |||| ||| ||||| || Sbjct 24887 ACACTTAACTTCAGGATCGTTACCAAGATTGCCAATGAT 24849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97953555821990