Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5865 158 3e-33 >seq5865 Length=143300 Score = 158 bits (174), Expect = 3e-33 Identities = 163/212 (77%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| |||| || || | |||||||| Sbjct 25596 ACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 25655 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | || |||||||| ||||||||||||||||| || Sbjct 25656 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 25715 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| ||||| |||||||| | ||| Sbjct 25716 ATCTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGCCTCCACCTCAAGGGTGATGGTC 25772 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 25773 TTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25804 Score = 158 bits (174), Expect = 3e-33 Identities = 163/212 (77%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| |||| || ||| |||||||| Sbjct 25824 ACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTTGGACCATCTTCC 25883 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | || |||||||| ||||||||||||||||| || Sbjct 25884 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 25943 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| ||||| |||||||| | ||| Sbjct 25944 ATCTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGCCTCCACCTCAAGGGTGATGGTC 26000 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || ||||| | ||||| Sbjct 26001 TTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 26032 Score = 154 bits (170), Expect = 3e-32 Identities = 170/225 (76%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || || ||||| ||||||||||| || || || ||||| |||| || || Sbjct 25355 TCTAAGGCGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 25414 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || |||||||| | | || |||||||| |||||||| Sbjct 25415 GCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCC 25474 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTC 195095 ||||||||| || || || ||||||||||||||||||||| ||| ||||| || Sbjct 25475 TTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGCCTCCACCTC 25531 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | ||||| || || | || || ||||| | ||||| Sbjct 25532 AAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 25576 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| |||||||||||||| || || ||||| |||| || || | |||||||| Sbjct 26052 ACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 26111 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | | || |||||||| ||||||||||||||||| || Sbjct 26112 AGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGG 26171 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || ||||||||||||||||||||| ||| ||||| |||||||| | ||| Sbjct 26172 ATCTTGGCCTTGACGTTCTCAATGGTGTC---GCTTGCCTCCACCTCAAGGGTGATGGTC 26228 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 26229 TTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 26260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109383301663805