Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3207 174 1e-37 seq4946 168 5e-36 seq2999 168 5e-36 seq978 104 2e-16 seq3663 98.7 8e-15 >seq3207 Length=2023586 Score = 174 bits (192), Expect = 1e-37 Identities = 351/518 (68%), Gaps = 6/518 (1%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | ||||| | ||| ||||| | || | ||| ||||||||||| Sbjct 1815615 ATTGGAATTGATCTTGGAACACCCTATTCATGTGTATGGGTATTTCAACATGGTAAAGTT 1815674 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||||||||||| || || ||| | || | || ||||| | ||||| || Sbjct 1815675 GAAATAATTGCCAATGACCAGGGAAACGGGACATCACCCAGCTATGTGGCCTTCACAGAC 1815734 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAA---GCCACTGGTAATCCTACCAAT 550171 || || || |||| |||||||| ||| | ||| |||| || || |||| |||| Sbjct 1815735 ACAGAGAGACTAATTGGAGATGCAGCCAAAAACCAAGTTGCCA-TG--AACCCTAACAAT 1815791 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 ||| | |||||||| |||||| | ||||| || || ||| |||| | | ||| | | || Sbjct 1815792 ACTGTATTTGATGCCAAACGTCTTATTGGCAGTAGGTTTGATGACCCCATTGTCCGGTCA 1815851 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 || ||||| | ||||||||| | | |||| || | ||||||||| | | ||| | Sbjct 1815852 GACATGAAACTTTGGCCTTTTAACGTGGTTAGTGATAGTGGAAAACCCAAAGTACAAGTT 1815911 Query 550292 ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATG 550351 || ||||| |||| || | || || || | || || ||||| || || Sbjct 1815912 GAGCACAAAGGAGAAACTAAAACCTTCTATCCTGAGGAAGTCTCCTCCATGGTCTTGGTG 1815971 Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 ||||||| | | | | || || | || || | |||| | || || || || Sbjct 1815972 AAAATGAGAGAGATTTCGGACGCCTTCTTGGGACACAAGGTTAACAACGCTGTCATCACG 1816031 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 || ||||| || |||||||||||||| || || || || | ||||| ||| || ||| Sbjct 1816032 GTCCCAGCTTACTTTAATGACTCACAGCGCCAGGCAACCGAGGATGCAGGAGTCATCGCT 1816091 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGC 550509 ||||| |||||| || | | |||| ||| || || || Sbjct 1816092 GGACTAAATGTTTTTAGGGTCATCAGTGAGCCGACAGC 1816129 >seq4946 Length=1076177 Score = 168 bits (186), Expect = 5e-36 Identities = 396/587 (67%), Gaps = 18/587 (3%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| || | || ||||| || || ||||| || | || |||| ||||| Sbjct 72 ATTGGTATTGACCTGGGTACCACCTACTCCTGCGTTGGGGTGTTCCAGCATGGAAAAGTG 131 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || |||||||| || || || |||||||| || || |||||| | ||||| || Sbjct 132 GAGATCATTGCCAACGACCAGGGCAACAGAACCACCCCGAGTTATGTGGCCTTCACAGAC 191 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 || || | |||||||||| |||||| |||| | ||| || || || | ||| Sbjct 192 ACAGAGAGGCTGATTGGTGATGCTGCAAAAAATCAGGTGGCCA-TG--AACCCCAACAAC 248 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || ||| | |||||| ||| ||| ||||||| ||||||| | Sbjct 249 ACCGTCTTTGATGCCAAGCGTCTCATTGGACGAAAGTTTGATGATTCCGTTGTTCAGTCT 308 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| ||| | | | | || | ||||| || | || ||| Sbjct 309 GACATGAAGCACTGGCCCTTCACAGTCATCAGTGATGGGGGAAAGCCCAAAGTTCAAGTG 368 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 ||| | | || | ||||| || | |||||| |||| || || ||||| | Sbjct 369 GAGTACAAAGGTGAGAACA---AAACATTTAAC-CCAGAAGAAATCTCCTCCATGGTCCT 424 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | || ||||| | | || || | | || || |||| || ||||||| || Sbjct 425 GGTCAAGATGAAGGAGATTGCTGAGGCCTACATGGGACAGAAAGTAACCAATGCAGTCAT 484 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT-A 550466 || || || || || || |||||||| || || || || || || || ||||| ||| | Sbjct 485 CACCGTTCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCTGG-CGTGA 543 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||||||| ||||| || | || ||||| || || || || || || |||| |||| Sbjct 544 TCGCTGGACTGAATGTGCTGAGGATCATCAACGAGCCCACGGCAGCAGCCATTGCTTATG 603 Query 550527 GACTTGATAAACATAATGATCAA-GAACTTAATGTACTCATCTTTGA 550572 |||| || ||| | || | || | |||||| ||||||||||| Sbjct 604 GACTGGACAAAGGCAC-GACCGGTGAGCGTAATGTCCTCATCTTTGA 649 >seq2999 Length=180986 Score = 168 bits (186), Expect = 5e-36 Identities = 396/587 (67%), Gaps = 18/587 (3%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| || | || ||||| || || ||||| || | || |||| ||||| Sbjct 161660 ATTGGTATTGACCTGGGTACCACCTACTCCTGCGTTGGGGTGTTCCAGCATGGAAAAGTG 161601 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || |||||||| || || || |||||||| || || |||||| | ||||| || Sbjct 161600 GAGATCATTGCCAACGACCAGGGCAACAGAACCACCCCGAGTTATGTGGCCTTCACAGAC 161541 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 || || | |||||||||| |||||| |||| | ||| || || || | ||| Sbjct 161540 ACAGAGAGGCTGATTGGTGATGCTGCAAAAAATCAGGTGGCCA-TG--AACCCCAACAAC 161484 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || ||| | |||||| ||| ||| ||||||| ||||||| | Sbjct 161483 ACCGTCTTTGATGCCAAGCGTCTCATTGGACGAAAGTTTGATGATTCCGTTGTTCAGTCT 161424 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| ||| | | | | || | ||||| || | || ||| Sbjct 161423 GACATGAAGCACTGGCCCTTCACAGTCATCAGTGATGGGGGAAAGCCCAAAGTTCAAGTG 161364 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 ||| | | || | ||||| || | |||||| |||| || || ||||| | Sbjct 161363 GAGTACAAAGGTGAGAACA---AAACATTTAAC-CCAGAAGAAATCTCCTCCATGGTCCT 161308 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | || ||||| | | || || | | || || |||| || ||||||| || Sbjct 161307 GGTCAAGATGAAGGAGATTGCTGAGGCCTACATGGGACAGAAAGTAACCAATGCAGTCAT 161248 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT-A 550466 || || || || || || |||||||| || || || || || || || ||||| ||| | Sbjct 161247 CACCGTTCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCTGG-CGTGA 161189 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||||||| ||||| || | || ||||| || || || || || || |||| |||| Sbjct 161188 TCGCTGGACTGAATGTGCTGAGGATCATCAACGAGCCCACGGCAGCAGCCATTGCTTATG 161129 Query 550527 GACTTGATAAACATAATGATCAA-GAACTTAATGTACTCATCTTTGA 550572 |||| || ||| | || | || | |||||| ||||||||||| Sbjct 161128 GACTGGACAAAGGCAC-GACCGGTGAGCGTAATGTCCTCATCTTTGA 161083 Score = 168 bits (186), Expect = 5e-36 Identities = 396/587 (67%), Gaps = 18/587 (3%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || ||||| || | || ||||| || || ||||| || | || |||| ||||| Sbjct 165203 ATTGGTATTGACCTGGGTACCACCTACTCCTGCGTTGGGGTGTTCCAGCATGGAAAAGTG 165262 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || |||||||| || || || |||||||| || || |||||| | ||||| || Sbjct 165263 GAGATCATTGCCAACGACCAGGGCAACAGAACCACCCCGAGTTATGTGGCCTTCACAGAC 165322 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAAT 550171 || || | |||||||||| |||||| |||| | ||| || || || | ||| Sbjct 165323 ACAGAGAGGCTGATTGGTGATGCTGCAAAAAATCAGGTGGCCA-TG--AACCCCAACAAC 165379 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | |||||||| || ||| | |||||| ||| ||| ||||||| ||||||| | Sbjct 165380 ACCGTCTTTGATGCCAAGCGTCTCATTGGACGAAAGTTTGATGATTCCGTTGTTCAGTCT 165439 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC- 550290 || |||||||| ||||| ||| | | | | || | ||||| || | || ||| Sbjct 165440 GACATGAAGCACTGGCCCTTCACAGTCATCAGTGATGGGGGAAAGCCCAAAGTTCAAGTG 165499 Query 550291 ---TACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 ||| | | || | ||||| || | |||||| |||| || || ||||| | Sbjct 165500 GAGTACAAAGGTGAGAACA---AAACATTTAAC-CCAGAAGAAATCTCCTCCATGGTCCT 165555 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | || ||||| | | || || | | || || |||| || ||||||| || Sbjct 165556 GGTCAAGATGAAGGAGATTGCTGAGGCCTACATGGGACAGAAAGTAACCAATGCAGTCAT 165615 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT-A 550466 || || || || || || |||||||| || || || || || || || ||||| ||| | Sbjct 165616 CACCGTTCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCTGG-CGTGA 165674 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||||||| ||||| || | || ||||| || || || || || || |||| |||| Sbjct 165675 TCGCTGGACTGAATGTGCTGAGGATCATCAACGAGCCCACGGCAGCAGCCATTGCTTATG 165734 Query 550527 GACTTGATAAACATAATGATCAA-GAACTTAATGTACTCATCTTTGA 550572 |||| || ||| | || | || | |||||| ||||||||||| Sbjct 165735 GACTGGACAAAGGCAC-GACCGGTGAGCGTAATGTCCTCATCTTTGA 165780 >seq978 Length=374410 Score = 104 bits (114), Expect = 2e-16 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | |||||||| || || || |||||||| || | ||||| || || |||| Sbjct 79945 ATGCAGTGGTCACTGTACCTGCTTACTTCAATGACTCCCAGAGGCAAGCCACAAAGGATG 79886 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||||| || |||||||| || || |||||||||||||| ||||||||||| Sbjct 79885 CAGGCACCATTGCCGGTCTTAATGTCCTGCGGATTATCAATGAACCCACTGCTGCTGCGA 79826 Query 550518 TTGCATATGG 550527 | || ||||| Sbjct 79825 TAGCCTATGG 79816 >seq3663 Length=3656041 Score = 98.7 bits (108), Expect = 8e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || || || || || || |||||||| || ||||| ||||| || |||| Sbjct 1433177 ATGCTGTAATTACGGTCCCGGCTTACTTCAATGACTCCCAGCGTCAGGCTACCAAGGATG 1433118 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | ||| || | || || || |||| ||||| ||||||||||| || ||||| || Sbjct 1433117 CAGGAACCATCTCAGGTCTCAACATTCTCCGTATCATCAATGAACCGACAGCTGCAGCTA 1433058 Query 550518 TTGCATATGGACTTGATAA 550536 | || |||||||| ||||| Sbjct 1433057 TCGCTTATGGACTCGATAA 1433039 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 ||||||||| || || | || |||||||| |||||||| || | || |||| || Sbjct 1448234 AGCTATAGGCATCGACCTTGGGACCACATACTCCTGTGTTGGAGTGTTCCAGCATGGCAA 1448293 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||||||| |||||||| || || || |||||||| || || ||||||| | ||||| Sbjct 1448294 AGTTGAAATCATTGCCAACGACCAGGGCAACAGAACCACCCCCAGTTATGTTGCCTTCAC 1448353 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 || | || | | | |||| ||||| || || Sbjct 1448354 TGATTCGGAGCGTCTCATTGGAGATGCTGCGAA 1448386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028930303613350