Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5361 89.7 6e-13 >seq5361 Length=1636355 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 ||||||||||||| || | ||||| ||| ||| | ||| ||||| | ||| || || | Sbjct 1221675 CTTCATCTCTACTGATAAGCTCATTGGAATAGGAGAGTCCAGGCATCAGACCCCTCTTCT 1221616 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| | || || ||||| || ||||| || || || || || ||||||||||||| Sbjct 1221615 TCAGCCAGTAGATGGCAGCAAAGGACCCAGAGAAAAAGATGCCCTCCACTGCTGCAAATG 1221556 Query 37318 CTACAAG 37324 | ||||| Sbjct 1221555 CCACAAG 1221549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592265601616600