Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq1950 145 2e-30 >seq1950 Length=44673 Score = 145 bits (160), Expect = 2e-30 Identities = 195/269 (72%), Gaps = 12/269 (4%) Strand=Plus/Minus Query 26011 TTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGG 26070 |||| ||| || || |||| || | |||||||||||||| || || ||||| ||| Sbjct 25090 TTTTGCCATTTACGCGTTTGCAACTTACCCTCAATGTAAACTTGAGAGCCTTTGCGTAGG 25031 Query 26071 TACTCGCCCGCGATCTCCGCTACCTTGCCAAA--CAGCACGACGCGATGCCATTCTGTCA 26128 || || || || || || |||| ||| ||||| ||||| || || ||||||||||| Sbjct 25030 TATTCACCGGCAATTTCAGCTAGCTTTCCAAAGACAGCA--ACACGGTGCCATTCTGTTT 24973 Query 26129 CTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGT 26188 |||||| | ||||| || | |||||| |||||||||||||| || || | |||| || Sbjct 24972 TTTCTTTTTGCTCGCCAGTGTTCTTATCTTTCCAGCTTTCTGATGTTGCCAACGTAAAGT 24913 Query 26189 TGGCGACTGCGCCGCCATTAGG----CATGTAACGGATCTCTGGATCGTTCCCCAGGTTA 26244 | || |||||||| ||| |||| || |||| || |||||||| || || || Sbjct 24912 TAGCAACTGCGCCACCACTAGGTAAACACTTAAC----TTCAGGATCGTTACCAAGATTG 24857 Query 26245 CCGACAAGGATTACTTTATTTACGCCGCG 26273 || | | |||| ||||||| | ||||| Sbjct 24856 CCAATGATGATTGCTTTATTGATTCCGCG 24828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159804476477890