Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_018280.1 Length=38889 Score E Sequences producing significant alignments: (Bits) Value seq204 104 6e-18 >seq204 Length=1493 Score = 104 bits (114), Expect = 6e-18 Identities = 134/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 32620 TCAAGCATTGCATTCAGGATAGGCTCAAGGAACACACGTTCAAAGTGGGCAGTCTTGTGC 32679 || ||||| |||||||| | ||||| |||| | || |||||| || | | || | Sbjct 1440 TCTAGCATGGCATTCAGTGTGGGCTCTAGGAGCTCAATCTCAAAGCTGGTAATTTTCTCT 1381 Query 32680 TGGAAGATACGACCAGCTGCAGT---CATCAGCTGACCTACTTCAAAGGCTGTCTTCTCA 32736 || |||||||| ||||| ||| | || | |||| ||||| ||||||||||||||| Sbjct 1380 TGAAAGATACGGCCAGCAGCATTTTGCAACGACTGA---ACTTCGAAGGCTGTCTTCTCA 1324 Query 32737 CCTGCACTACGAATACCCATAGCCTCACGAGGAGCACCTGCCATCATCTCCATCTTAGCT 32796 ||||| | ||||| |||||||||||||| || || || | || ||||| || || Sbjct 1323 CCTGCTGTGCGAATCCCCATAGCCTCACGTGGTGCGCCAGAGTACAGTTCCATTTTTTCT 1264 Query 32797 TCAA 32800 |||| Sbjct 1263 TCAA 1260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124312991122730