Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq1950 82.4 2e-11 >seq1950 Length=44673 Score = 82.4 bits (90), Expect = 2e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 17019 ACCGACAAACAAGAAATGTTCTGTCGCGAGTACCTCATCGACTTAAACGCCACACAGGCG 17078 || |||||| || ||||||| |||||||| || ||| ||||||| ||||| || Sbjct 32808 ACAGACAAAATGGAGTTGTTCTGCAAAGAGTACCTAATTGACCTAAACGCTACACAAGCA 32867 Query 17079 GCGATTCGGGCGGGGTACAGCGTCAAAACGGCTAACCGCACCGCCTCCGAAAACCTGTCA 17138 |||||| | || || ||||||| | || || | | | | |||||| ||||| Sbjct 32868 GCGATTAGAGCAGGATACAGCGAAAGCACTGCAAGACAGGCAGGAAGTGAAAACTTGTCA 32927 Query 17139 AAACCTGACATCCAAAACAGAATCGCTGAACTCAA 17173 |||||| |||| ||| | |||||| ||||||| || Sbjct 32928 AAACCTAACATACAAGAAAGAATCACTGAACTTAA 32962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127784706017280