Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5865 89.7 4e-13 >seq5865 Length=143300 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | || || || || ||||| || || ||||| |||| Sbjct 26034 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 26093 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || || || ||||| | ||| || || || ||| Sbjct 26094 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 26153 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || || | || | ||||| | ||||| Sbjct 26154 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACC 26213 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || || | || || ||||| |||||||| Sbjct 26214 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 26260 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | || || || || ||||| || || ||||| |||| Sbjct 25578 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25637 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || || || ||||| | ||| || || || ||| Sbjct 25638 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25697 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || || | || | ||||| | ||||| Sbjct 25698 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACC 25757 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| |||| || || || || | || || || || ||||||||| Sbjct 25758 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 25805 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || | ||| | || | || || || || ||||| || || ||||| |||| Sbjct 25806 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25865 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| |||| |||| ||||| || || || ||||| | ||| || || || ||| Sbjct 25866 AGGGTTGGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25925 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || || | || | ||||| | ||||| Sbjct 25926 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACC 25985 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| |||| || || || || | || || || || ||||||||| Sbjct 25986 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 26033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396245003018655