Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq257 86.0 5e-12 >seq257 Length=13053552 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48536 GTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATC 48595 || ||| || | || || | ||| | ||| || ||| || || || || ||||| || Sbjct 5263154 GTTGCCACCACGGAGACGGAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTC 5263095 Query 48596 AGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGT 48655 ||||| | ||| | || ||||||||||||||||| || ||||| ||||| || || | Sbjct 5263094 GGATAGGGTACGACCATCTTCCAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGG 5263035 Query 48656 GGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTC 48715 ||| | |||||| ||||| || || || ||| | | || || | ||| Sbjct 5263034 GGGGATGCCCTCTTTGTCCTGGATTTTAGCCTTGACATTCTCAATAGTGTCACTGGGCTC 5262975 Query 48716 CACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||||| | || || || || || |||| || || || || ||||||||| Sbjct 5262974 CACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATC 5262923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380905495888545