Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3451 212 1e-49 seq6426 168 1e-36 seq4076 159 6e-34 seq3182 138 2e-27 seq6219 105 1e-17 seq3371 98.7 2e-15 seq5361 93.3 8e-14 seq1943 87.8 3e-12 >seq3451 Length=7496905 Score = 212 bits (234), Expect = 1e-49 Identities = 182/224 (81%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 241409 TGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTG 241468 |||| ||||| | ||| ||||||||||| || || |||||||| || || || ||| | Sbjct 6266783 TGCCTAAGGACTTTCTGCTTGAGTTGGGCGACTTGTTCCCGCAGCACCGAGGCCGTACTA 6266724 Query 241469 GACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGT 241528 ||||||||||||||||||||||| || || |||||||||||||||| ||| | ||||||| Sbjct 6266723 GACAGTCCTGCGTTGTCAGACTTCAGGACTTTCACTTTCTCCTCCAACCGGGAGATGCGT 6266664 Query 241529 TCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCC 241588 ||||| |||||||| ||||| || || ||||||| ||||| | || |||| || || Sbjct 6266663 TCCAGCTTGCGCCGCCGGCACTTTGTCGCTGCCACTCGGTTTCTCAGCTTCTTGCGCTCT 6266604 Query 241589 GCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC-TTGG 241631 ||||| || ||||||||| |||||||||||||| ||| |||| Sbjct 6266603 GCCTTTATCCGTTCCTGGGATTCCATGTCGATCGGGGACATTGG 6266560 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||| ||||||||||| || | |||||||| || || || ||| | ||||| || |||| Sbjct 6266770 TCTGCTTGAGTTGGGCGACTTGTTCCCGCAGCACCGAGGCCGTACTAGACAGTCCTGCGT 6266711 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | |||||||| || | |||||||||| ||| | ||||||||||||||| Sbjct 6266710 TGTCAGACTTCAGGACTTTCACTTTCTCCTCCAACCGGGAGATGCGTTCCAGCTT 6266656 >seq6426 Length=130680 Score = 168 bits (186), Expect = 1e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 241427 TTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCA 241486 ||||| || || ||||| |||||||| | | || | | | || || |||||||| Sbjct 88528 TTGAGCTGCGCGACCTGCTCCCGCAGCAGCGTGGCCGCGCTCGCGAGGCCGGCGTTGTCC 88469 Query 241487 GACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGG 241546 | |||||||| |||||| || |||||||| |||| |||||| ||||| || | | |||| Sbjct 88468 GTCTTGAGCAGCTTCACCTTGTCCTCCAGGCGCGAGATGCGCTCCAGCTTCCTCTTGCGG 88409 Query 241547 CATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGG 241606 || |||||||| |||| ||||| ||||| |||| || || ||||||||||| |||||| Sbjct 88408 CACTTGGTGGCCGCCAGCCGGTTGCGGAGCTTCTTGCGCTCGGCCTTGATGCGCTCCTGG 88349 Query 241607 TCCTCCATGTCGATCGGAGACTTGGG 241632 |||||||||||||| || ||| |||| Sbjct 88348 TCCTCCATGTCGATAGGGGACATGGG 88323 >seq4076 Length=4753649 Score = 159 bits (176), Expect = 6e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||| | ||||||||| ||||||||||| || |||| | | ||||| || ||| Sbjct 613408 CATGACTTTCTGTTTGAGCTGGGCCACCTGCTCGCGCAAGATGCTGGCGGTGGAGGCCAG 613349 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 | | ||| | | ||| ||||||||||| |||||||||||||||| |||||| ||||| Sbjct 613348 GTCAGAGTTCTGCGTCTTCAGCACCTTCACCTTCTCCTCCAGCCGCGAGATGCGCTCCAG 613289 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || ||| |||||| |||| ||| || | |||||| || || |||| || |||||||| Sbjct 613288 CTTCCGCTTGCGGCACTTGGAGGCGGCGATGCGGTTGCGCAGCTTCTTGCGCTCCGCCTT 613229 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 |||||| ||||| ||||| |||||| || || Sbjct 613228 GATGCGCTCCTGCGTCTCCAGGTCGATGGGCGA 613196 >seq3182 Length=3053334 Score = 138 bits (152), Expect = 2e-27 Identities = 140/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 48092 TCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAG 48151 ||||| ||||||||| ||||||||| | | || |||||||||||| | ||||| | Sbjct 791489 TCTGATGGTTTGTTGACAAGGTGCTTGA---ACATCAGGCAGGCAAAGTCACAGTGCAGG 791433 Query 48152 CCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGT 48211 || || || | |||||| ||| | |||||||| || |||||||| | ||||||| Sbjct 791432 CCCTCATCTCTGCTGATAAGCTCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTC 791373 Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 || ||||||||||| | || || ||||||||||| |||||||||||||| || || || Sbjct 791372 TTCAGCCAGAAAATGGATGCAAATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAG 791313 Query 48272 GC 48273 || Sbjct 791312 GC 791311 Score = 138 bits (152), Expect = 2e-27 Identities = 140/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 48092 TCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAG 48151 ||||| ||||||||| ||||||||| | | || |||||||||||| | ||||| | Sbjct 884704 TCTGATGGTTTGTTGACAAGGTGCTTGA---ACATCAGGCAGGCAAAGTCACAGTGCAGG 884648 Query 48152 CCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGT 48211 || || || | |||||| ||| | |||||||| || |||||||| | ||||||| Sbjct 884647 CCCTCATCTCTGCTGATAAGCTCATTGGAGAAAGTAAGGCCAGGCATAAGACCCCTCTTC 884588 Query 48212 TTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAAC 48271 || ||||||||||| | || || ||||||||||| |||||||||||||| || || || Sbjct 884587 TTCAGCCAGAAAATGGATGCAAATGAGCCAGAGAAAAAGATGCCCTCCACAGCAGCAAAG 884528 Query 48272 GC 48273 || Sbjct 884527 GC 884526 >seq6219 Length=4626575 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||| | ||| || || || || ||||| || || || | | ||| || ||| || Sbjct 412700 CATGACTTTCTGCTTCAGCTGCGCTACCTGTTCGCGGAGCATGTTCGCAGTGGAGGAAAG 412759 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 | | ||| | ||||| || ||||||||| ||||||||||| | ||| | |||||| Sbjct 412760 ATCAGAGTTTTGGGACTTCAGATTCTTCACTTTATCCTCCAGCCGGGAGATCCTTTCCAG 412819 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 ||| | | |||||||||| ||| || | | ||||| | | ||| | || ||||| Sbjct 412820 TTTCCTCTTCCGGCATTTGGAGGCGGCGACCCTGTTCCTCATGCGCTTCCTCTCAGCCTT 412879 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGA 241626 || || ||||||| ||||||||| || ||||| Sbjct 412880 TATCCGCTCCTGGTTCTCCATGTCAATGGGAGA 412912 >seq3371 Length=3225571 Score = 98.7 bits (108), Expect = 2e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 38871 GGTTTCGCGCTGCTGAATGCCACACCGGAGAATGCGTACCTGTCCAACACCAGGCTCGTC 38930 ||||| |||||| | ||||||||||| ||||||||||| | ||||| ||| ||||| || Sbjct 1710641 GGTTTGGCGCTGGTAAATGCCACACCAGAGAATGCGTAGCGGTCCACCACAAGGCTGATC 1710582 Query 38931 CCCCGTTCCAGCTTCTGCTTCATC 38954 ||| |||||||||||| ||||||| Sbjct 1710581 CCCTGTTCCAGCTTCTCCTTCATC 1710558 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 38960 CACCAGCTCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGT 39019 ||| |||||||| | |||||||||||| ||||| || || | |||||| |||| | | Sbjct 1709592 CACGAGCTCCCAACGGTTGGCGGAGAACAGCAGATGAACCGTGTGGTCCTCCAAGTTGCT 1709533 Query 39020 CTTACTCTCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070 ||| ||||||||||| |||||||||| | || || | || |||||||| Sbjct 1709532 CTTTCTCTCCAGGTAGGAGCTGATCAGATGACCAATCTTTGTAGTTCTGTC 1709482 >seq5361 Length=1636355 Score = 93.3 bits (102), Expect = 8e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 48153 CTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTT 48212 |||| || | ||||| ||| | ||||| || |||| |||||||| | ||||||| | Sbjct 1221675 CTTCATCTCTACTGATAAGCTCATTGGAATAGGAGAGTCCAGGCATCAGACCCCTCTTCT 1221616 Query 48213 TGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACG 48272 | |||||| | || || || || || |||||||| ||||||||||||||||| || || | Sbjct 1221615 TCAGCCAGTAGATGGCAGCAAAGGACCCAGAGAAAAAGATGCCCTCCACTGCTGCAAATG 1221556 Query 48273 C 48273 | Sbjct 1221555 C 1221555 >seq1943 Length=432286 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 || |||| |||||| || || |||| ||||| | ||||| |||||| | ||| | Sbjct 422946 ACCCTCTCCATGAAGAGATCTGGGATCCACATGCCATAGAACAAGTCCCTCGCTCTCTGC 422887 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || ||| ||| | ||| || ||| || || ||||||||||||||| |||||| ||| Sbjct 422886 TCTTCCTTTCCTGTGTTCTTCTTCAGCTCAAGGAAGTCAAAGATGTCCAAGTGCCATGGC 422827 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 || | ||| ||||| || || || || |||| Sbjct 422826 TCAAGGTACATGGCGAATGCACCAGGTCTCT 422796 Score = 84.2 bits (92), Expect = 4e-11 Identities = 131/188 (70%), Gaps = 12/188 (6%) Strand=Plus/Minus Query 213174 TAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTT 213233 ||||||||| ||| || |||||||| ||| | || ||| || |||||||||||||| Sbjct 424117 TAGGGGCCAAGCTTCTCTGCCAGCTCACAGCTGGACTCCAGCGCTGCGTAGTAGATGGTC 424058 Query 213234 TCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTG------GGGACGTGAAGGGCATCATC 213287 ||||| |||| ||||||| || || |||| ||| | || |||||| Sbjct 424057 TCAAAGATCTGGATGTTGAGGCGCTGAGCATCTGCACTTTCAAACGGGTAGCGCATCAGG 423998 Query 213288 ATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGG 213347 || ||| ||||||| || ||||| || || ||||| || || ||||||||| | Sbjct 423997 AT------GAAGGCATCAGCAAGACCCTGAACACCAATGCCAATAGGCCTGTGTCTCCTG 423944 Query 213348 TTAGACTT 213355 || || || Sbjct 423943 TTGGAATT 423936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931452280633600