Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3182 158 2e-33 seq5361 98.7 2e-15 >seq3182 Length=3053334 Score = 158 bits (174), Expect = 2e-33 Identities = 184/245 (75%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||||||||||||||||||||||||| || || ||||| Sbjct 791296 GGTGAGCGAGTGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCA 791355 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 |||| |||||||| ||| ||| ||| ||||| || || |||||| ||||| ||||| Sbjct 791356 TCCATTTTCTGGCTGAAGAAGAGGGGTCTTATGCCTGGCCT-TACTTTCTCCAATGAGCT 791414 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 |||||||| || ||||| || ||| | || |||||||||||| | | || | ||| | Sbjct 791415 TATCAGCAGAGATGAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAAG---CACCT 791471 Query 26052 GCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGA 26111 || ||||||| || |||| || ||| | || |||| | ||||| ||||| || Sbjct 791472 TGTCAACAAACCATCAGAAGAAACGGTCAGGAAGATAATCATGAATGCTGTTGAGATTGA 791531 Query 26112 GAAGG 26116 | ||| Sbjct 791532 GCAGG 791536 Score = 158 bits (174), Expect = 2e-33 Identities = 184/245 (75%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||||||||||||||||||||||||| || || ||||| Sbjct 884511 GGTGAGCGAGTGGTTGCCTTTGCTGCTGTGGAGGGCATCTTTTTCTCTGGCTCATTTGCA 884570 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 |||| |||||||| ||| ||| ||| ||||| || || |||||| ||||| ||||| Sbjct 884571 TCCATTTTCTGGCTGAAGAAGAGGGGTCTTATGCCTGGCCT-TACTTTCTCCAATGAGCT 884629 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 |||||||| || ||||| || ||| | || |||||||||||| | | || | ||| | Sbjct 884630 TATCAGCAGAGATGAGGGCCTGCACTGTGACTTTGCCTGCCTGATGTTCAAG---CACCT 884686 Query 26052 GCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGA 26111 || ||||||| || |||| || ||| | || |||| | ||||| ||||| || Sbjct 884687 TGTCAACAAACCATCAGAAGAAACGGTCAGGAAGATAATCATGCATGCTGTTGAGATTGA 884746 Query 26112 GAAGG 26116 | ||| Sbjct 884747 GCAGG 884751 >seq5361 Length=1636355 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||| | || || || ||||| || |||||||||||||||||| || || ||||| Sbjct 1221540 GGGGAGAGACTTGTGGCATTTGCAGCAGTGGAGGGCATCTTTTTCTCTGGGTCCTTTGCT 1221599 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| |||||| ||| ||| ||| ||||| || || | || |||||| ||||| Sbjct 1221600 GCCATCTACTGGCTGAAGAAGAGGGGTCTGATGCCTGGACTCTCCTATTCCAATGAGCTT 1221659 Query 25993 ATCAGCAGGGACGA 26006 ||||| || || || Sbjct 1221660 ATCAGTAGAGATGA 1221673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928764512977600