Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_019540.1 Length=49390 Score E Sequences producing significant alignments: (Bits) Value seq204 329 1e-85 >seq204 Length=1493 Score = 329 bits (364), Expect = 1e-85 Identities = 857/1280 (67%), Gaps = 50/1280 (4%) Strand=Plus/Minus Query 34673 CTCCAGCATAGCGTTTAGGATAGGCTCTAACAGCTCCACCTCAAACGTATTAATCTTTTC 34732 ||| ||||| || || || | ||||||| ||||| | |||||| | |||| || || Sbjct 1441 CTCTAGCATGGCATTCAGTGTGGGCTCTAGGAGCTCAATCTCAAAGCTGGTAATTTTCTC 1382 Query 34733 TTGGAAGATACGTCCAGCAGAGTTTTGGAGGGCCTGTACTTCGTATGCGGTCTTCTCGCC 34792 ||| |||||||| ||||||| ||||| | | ||| |||||| | || |||||||| || Sbjct 1381 TTGAAAGATACGGCCAGCAGCATTTTGCAACGACTGAACTTCGAAGGCTGTCTTCTCACC 1322 Query 34793 AGGGGTTCGGATACCCATTGCCTCACGGGGAGCCCCTGCAAAAGCCTCCATCTTATTCTC 34852 | || || || ||||| |||||||| || || || | | ||||| || | || Sbjct 1321 TGCTGTGCGAATCCCCATAGCCTCACGTGGTGCGCCAGAGTACAGTTCCATTTTTTCTTC 1262 Query 34853 AATA-AGCTGAATGTCTTGCTGAGCCTGC-ACAAC-CCACTGAGCATTCTTACCTAACTC 34909 || | ||| ||| || | || |||| | || || | || ||||| |||| ||| Sbjct 1261 AAGAGAGCC-AATTTCGTTA-GACGCTGCTATAATGCCGTTCAGG-TTCTTGCCTAGCTC 1205 Query 34910 CTGCACGTCCCCGTCTGCATCCATGTGGATTTCAGCACTGGGCCCCCATTCAAACTCCTC 34969 ||||| || | | || |||| || ||||||| || |||||| ||||||| || Sbjct 1204 AGCTACGTCACCATTCTCGTCGGTGTGTATCTCAGCACCTGGGCCCCATACAAACTCTTC 1145 Query 34970 AACCTCACCGTAGATTTTGAGAGGCGGGTGTACACACAAGTCCATTGCATCCGCTTTGAG 35029 |||||||| | || || || ||||| ||||||||||||||||| || ||||| || Sbjct 1144 TACCTCACCCTTAATGACAAGCGGTGGGTGCACACACAAGTCCATTGCGTCAGCTTTAAG 1085 Query 35030 GTTCTCCAGGTGATCTAGTCGGTACTGAAGGCCAACCAAGTTGTCTAGGGGCCCCATAGC 35089 |||||| ||||| || | ||||| || | |||||||||||||| | || |||||||| Sbjct 1084 GTTCTCAAGGTGGTCAATACGGTATTGCATACCAACCAAGTTGTCCAAAGGTCCCATAGC 1025 Query 35090 CCACATGTTGTCAGGGCGGAAACGCCAGCCTACGTGGTAGATAGGAGAGTCCCCAAACCA 35149 ||||| ||| ||||| || |||||| || || || | | || | | ||||| | Sbjct 1024 CCACAGGTTATCAGGTCGTGTACGCCACCCAACATGACATAAGGGGGCTTTACCAAAGTA 965 Query 35150 A---TAAGGAGCCTCAATATCACGAATTACATGGCTTCTATCCATAATTGTGATGA-TGC 35205 | | || ||| || | || |||||||| | || | ||||| |||| | | Sbjct 964 AGACTTGATAGGCTC---TTCCCTAACTACATGGCAACGGTCAAAGATTGTTATGACTAC 908 Query 35206 GGTCTTCTTTAATCTCCCCTGTGGACGGGTCGTGCAAATCTCCGTAAAACTCTAACAACT 35265 | | ||| | | || || || | | ||| | || || || ||||| | | || Sbjct 907 GTTTGACTTCAGT-TCACCAGTTTCTGTGCTGTGGTAGTCGCCATAGAACTCAAGTATCT 849 Query 35266 CCACGTAACCAGAGGTGTAGTATTCGTAGATGCTGCCAAAACCGTCAACGTAGAAT--CC 35323 | || || |||| |||||||||||||| | ||||||| ||||| || ||||| || Sbjct 848 CTACATAGTCAGATTGGTAGTATTCGTAGAGGTTGCCAAATCCGTCCAC--AGAATAGCC 791 Query 35324 TTGGTACTTCGCCCAATCTTCCAGGGAGTACGCCCCCATTTTACGAACAGTCTCTGAGCG 35383 | ||| | | ||||| | | || | || || || | ||| || Sbjct 790 CTCAGCCTTATCGAAGTCTTCTATGCTATAACCACC-----TAGGACCTTCCTCATAGTT 736 Query 35384 CTTCTCAAGGGC------CGAGGCCAGGTCTTCGTTGTCCGGCTCATCTTGGACCATCTT 35437 || | |||| ||| || | | |||| ||| || | ||||||| Sbjct 735 GCCCT-ACGGGCCGCATACGAAGCATAGAAGGCATTGTTAGGCCACTCCTCTGCCATCTT 677 Query 35438 CTTAATTTCACCAAGAGTGACAACAGAACGTACAATCTTGAAGGTTGAGCCAAAGTCTGA 35497 || || ||||||| ||| | | |||||||||||||| | ||||| ||| Sbjct 676 CTGTATCTCACCAACAGTTTTGATACTTCGTACAATCTTGAATGACTCATCAAAGGTTGA 617 Query 35498 AGCCAATGGGTTGAACACAATGTCCAATGGGCTGATACGCTTAAC-CAC-AGGCCCTACG 35555 || |||| |||||||||||||| || ||| | | ||| ||| || || | | Sbjct 616 GGCAGTGGGGTCAAACACAATGTCCAACGG--TGAAATACGGAACACACGGGGTCCGATG 559 Query 35556 TAAGAAGTTACCTCTTCTCCATTG-ATGATGCGTCTC----TTGTCCTCAAAAG-CCACT 35609 || || || || || || || | |||| ||| | | ||| | || Sbjct 558 AAACCAGCAACACGTTGGCCTGTGTCTGGGTCTTCTCGGTATTGAGCAGAGAAGTCTACA 499 Query 35610 GTGGCGAACGCATTGCCATAATCAATGTAATCGTACAGGAGCTTAGACATCTCTGTTCTG 35669 || ||||| || || ||||| || || ||||| ||| || |||||||||||||| | | Sbjct 498 GTAGCGAATGCGTTACCATAGTCGATATAATCTAACAACAGTTTAGACATCTCTGTACGG 439 Query 35670 AAGTGGCTTACACGAGTCTTATTGGACATGTATGCTTC-----CAC--TTTCTCAGCTTT 35722 ||||||| ||||||| || || |||||| ||||| ||| || || ||| Sbjct 438 AAGTGGCCCTCACGAGTTTTGTTCTTCATGTAGGCTTCAATAGCACGGGTTTTCTTCTTG 379 Query 35723 CTGGGCATCACCTTGTTTATAACCCTCCCAACGGAGCCAATCGTCATTAGGGAACAACGC 35782 | | |||| | | ||| |||||||||| | ||| |||||||||||||| | || Sbjct 378 GT-GCCATCGTCCTTAGAATATGCCTCCCAACGCAACCAGTCGTCATTAGGGAAGAGGGC 320 Query 35783 GGACACATAGTTTGAGTGAAGGTTGTCACGAATCTGACAGATTTTAGGGAGGGTTGTAGA 35842 |||| ||||| ||||| |||||||| || || || || | |||||||| |||||||| Sbjct 319 AGACAAGTAGTTGGAGTGCAGGTTGTCTCGTATTTGGCAAAGCTTAGGGAGTGTTGTAGA 260 Query 35843 GTTCTTCCACGGCAA-GTCTGAGTTGCTGGTGGTGGTTGTGTCTGTTGCAAAGATGTAGT 35901 ||||||||| ||||| ||||| | ||| ||||| || ||||| || ||||||| ||||| Sbjct 259 GTTCTTCCAAGGCAATGTCTGGTTAGCT-GTGGTTGTGGTGTCAGTGGCAAAGACGTAGT 201 Query 35902 TTCGGAGCTCTGTCCACTCT 35921 | || | || |||||||| Sbjct 200 TACGTAATTCCTTCCACTCT 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157913431774960