Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq3207 192 4e-43 seq4946 156 3e-32 seq2999 156 3e-32 seq978 100 2e-15 seq257 93.3 3e-13 >seq3207 Length=2023586 Score = 192 bits (212), Expect = 4e-43 Identities = 359/525 (68%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 474323 AGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAAT 474382 ||||| ||||||| |||||| | ||||| | || |||||| || | ||| || Sbjct 1815606 AGAATATCAATTGGAATTGATCTTGGAACACCCTATTCATGTGTATGGGTATTTCAACAT 1815665 Query 474383 GGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCT 474442 |||||||| |||||||||||||||||||| || || | ||| |||| ||||| | Sbjct 1815666 GGTAAAGTTGAAATAATTGCCAATGACCAGGGAAACGGGACATCACCCAGCTATGTGGCC 1815725 Query 474443 TTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCT 474502 || || || || || || ||||||||||| || ||| | |||| ||| || ||| Sbjct 1815726 TTCACAGACACAGAGAGACTAATTGGAGATGCAGCCAAAAACCAAGTTGCCATGAACCCT 1815785 Query 474503 GTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTC 474562 |||||| | |||||||| ||| | | ||||| ||| |||||||| ||| |||| Sbjct 1815786 AACAATACTGTATTTGATGCCAAACGTCTTATTGGCAGTAGGTTTGATGACCCCATTGTC 1815845 Query 474563 CAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA 474622 | || || ||| | |||||||||||| ||| | | || | |||| ||||| | || Sbjct 1815846 CGGTCAGACATGAAACTTTGGCCTTTTAACGTGGTTAGTGATAGTGGAAAACCCAAAGTA 1815905 Query 474623 GAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 ||| ||| ||| ||||||||| || | || || || | || || ||||| Sbjct 1815906 CAAGTTGAGCACAAAGGAGAAACTAAAACCTTCTATCCTGAGGAAGTCTCCTCCATGGTC 1815965 Query 474683 TTAGCCAAAATGAAACAAACCGCGAGCTCATATCTT-GGACAAGAAGTAACTGATGCAGT 474741 || | ||||||| | | | || | | | |||| ||||| | || | | || || Sbjct 1815966 TTGGTGAAAATGAGAGAGATTTCGGACGCCT-TCTTGGGACACAAGGTTAACAACGCTGT 1816024 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || || ||||| || |||||||| || || || || ||||| | ||||| ||| Sbjct 1816025 CATCACGGTCCCAGCTTACTTTAATGACTCACAGCGCCAGGCAACCGAGGATGCAGGAGT 1816084 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 || || || || |||||||| | | || | ||| || ||||| Sbjct 1816085 CATCGCTGGACTAAATGTTTTTAGGGTCATCAGTGAGCCGACAGC 1816129 >seq4946 Length=1076177 Score = 156 bits (172), Expect = 3e-32 Identities = 370/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 474326 ATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGT 474385 ||| | ||||||||||| | || || || ||| || || | || | || |||| Sbjct 66 ATTTCCATTGGTATTGACCTGGGTACCACCTACTCCTGCGTTGGGGTGTTCCAGCATGGA 125 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 ||||| || || |||||||| ||||| || || ||||| || || ||||| | || Sbjct 126 AAAGTGGAGATCATTGCCAACGACCAGGGCAACAGAACCACCCCGAGTTATGTGGCCTTC 185 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 || || || || || ||||| |||||||| ||| |||| | || || || Sbjct 186 ACAGACACAGAGAGGCTGATTGGTGATGCTGCAAAAAATCAGGTGGCCATGAACCCCAAC 245 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || | |||||||| || | | ||||| || || ||||||||| || ||| || Sbjct 246 AACACCGTCTTTGATGCCAAGCGTCTCATTGGACGAAAGTTTGATGATTCCGTTGTTCAG 305 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 ||||| ||| || ||||| || | || || | || ||| || || || | | || Sbjct 306 TCTGACATGAAGCACTGGCCCTTCACAGTCATCAGTGATGGGGGAAAGCCCAAAGTTCAA 365 Query 474626 --GCAATACACGCAGGTGA-AACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | | |||| |||||| ||| |||| |||| || ||| |||| || || ||||| Sbjct 366 GTGGAGTACA--AAGGTGAGAACAAAAC-ATTTAACCCAGAAGAAATCTCCTCCATGGTC 422 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | | ||| ||||| | | || ||| | || | ||||| ||||||| ||||||| Sbjct 423 CTGGTCAAGATGAAGGAGATTGCTGAG-GCCTACATGGGACAGAAAGTAACCAATGCAGT 481 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || ||||| || || || || || || || || || || Sbjct 482 CATCACCGTTCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCTGGCGT 541 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || || || ||||| | | || || || || || || ||||| || ||||||| Sbjct 542 GATCGCTGGACTGAATGTGCTGAGGATCATCAACGAGCCCACGGCAGCAGCCATTGCTTA 601 Query 474862 TGGTCTTGATAA 474873 ||| || || || Sbjct 602 TGGACTGGACAA 613 >seq2999 Length=180986 Score = 156 bits (172), Expect = 3e-32 Identities = 370/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 474326 ATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGT 474385 ||| | ||||||||||| | || || || ||| || || | || | || |||| Sbjct 161666 ATTTCCATTGGTATTGACCTGGGTACCACCTACTCCTGCGTTGGGGTGTTCCAGCATGGA 161607 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 ||||| || || |||||||| ||||| || || ||||| || || ||||| | || Sbjct 161606 AAAGTGGAGATCATTGCCAACGACCAGGGCAACAGAACCACCCCGAGTTATGTGGCCTTC 161547 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 || || || || || ||||| |||||||| ||| |||| | || || || Sbjct 161546 ACAGACACAGAGAGGCTGATTGGTGATGCTGCAAAAAATCAGGTGGCCATGAACCCCAAC 161487 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || | |||||||| || | | ||||| || || ||||||||| || ||| || Sbjct 161486 AACACCGTCTTTGATGCCAAGCGTCTCATTGGACGAAAGTTTGATGATTCCGTTGTTCAG 161427 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 ||||| ||| || ||||| || | || || | || ||| || || || | | || Sbjct 161426 TCTGACATGAAGCACTGGCCCTTCACAGTCATCAGTGATGGGGGAAAGCCCAAAGTTCAA 161367 Query 474626 --GCAATACACGCAGGTGA-AACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | | |||| |||||| ||| |||| |||| || ||| |||| || || ||||| Sbjct 161366 GTGGAGTACA--AAGGTGAGAACAAAAC-ATTTAACCCAGAAGAAATCTCCTCCATGGTC 161310 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | | ||| ||||| | | || ||| | || | ||||| ||||||| ||||||| Sbjct 161309 CTGGTCAAGATGAAGGAGATTGCTGAG-GCCTACATGGGACAGAAAGTAACCAATGCAGT 161251 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || ||||| || || || || || || || || || || Sbjct 161250 CATCACCGTTCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCTGGCGT 161191 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || || || ||||| | | || || || || || || ||||| || ||||||| Sbjct 161190 GATCGCTGGACTGAATGTGCTGAGGATCATCAACGAGCCCACGGCAGCAGCCATTGCTTA 161131 Query 474862 TGGTCTTGATAA 474873 ||| || || || Sbjct 161130 TGGACTGGACAA 161119 Score = 156 bits (172), Expect = 3e-32 Identities = 370/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 474326 ATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGT 474385 ||| | ||||||||||| | || || || ||| || || | || | || |||| Sbjct 165197 ATTTCCATTGGTATTGACCTGGGTACCACCTACTCCTGCGTTGGGGTGTTCCAGCATGGA 165256 Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 ||||| || || |||||||| ||||| || || ||||| || || ||||| | || Sbjct 165257 AAAGTGGAGATCATTGCCAACGACCAGGGCAACAGAACCACCCCGAGTTATGTGGCCTTC 165316 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTT 474505 || || || || || ||||| |||||||| ||| |||| | || || || Sbjct 165317 ACAGACACAGAGAGGCTGATTGGTGATGCTGCAAAAAATCAGGTGGCCATGAACCCCAAC 165376 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || | |||||||| || | | ||||| || || ||||||||| || ||| || Sbjct 165377 AACACCGTCTTTGATGCCAAGCGTCTCATTGGACGAAAGTTTGATGATTCCGTTGTTCAG 165436 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 ||||| ||| || ||||| || | || || | || ||| || || || | | || Sbjct 165437 TCTGACATGAAGCACTGGCCCTTCACAGTCATCAGTGATGGGGGAAAGCCCAAAGTTCAA 165496 Query 474626 --GCAATACACGCAGGTGA-AACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTT 474682 | | |||| |||||| ||| |||| |||| || ||| |||| || || ||||| Sbjct 165497 GTGGAGTACA--AAGGTGAGAACAAAAC-ATTTAACCCAGAAGAAATCTCCTCCATGGTC 165553 Query 474683 TTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGT 474741 | | ||| ||||| | | || ||| | || | ||||| ||||||| ||||||| Sbjct 165554 CTGGTCAAGATGAAGGAGATTGCTGAG-GCCTACATGGGACAGAAAGTAACCAATGCAGT 165612 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || ||||| || || || || || || || || || || Sbjct 165613 CATCACCGTTCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAGGACGCTGGCGT 165672 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || || || ||||| | | || || || || || || ||||| || ||||||| Sbjct 165673 GATCGCTGGACTGAATGTGCTGAGGATCATCAACGAGCCCACGGCAGCAGCCATTGCTTA 165732 Query 474862 TGGTCTTGATAA 474873 ||| || || || Sbjct 165733 TGGACTGGACAA 165744 >seq978 Length=374410 Score = 100 bits (110), Expect = 2e-15 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||||||| | || || |||||||| | ||||||| ||| | || || Sbjct 77288 TGAAGGTGAAAGAGCTATGACAAAGGATAATAATATCCTTGGAAAATTTGAGCTGACTGG 77229 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 || || |||||||| ||||| ||||| |||||||| || || ||||| || ||||| || Sbjct 77228 CATCCCCCCTGCTCCAAGAGGGGTTCCACAAATTGAGGTGACCTTTGACATCGATGCCAA 77169 Query 476152 TGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||| || || ||||| ||||| ||| || Sbjct 77168 TGGCATCCTCAATGTCTCTGCTGCTGACAA 77139 Score = 86.0 bits (94), Expect = 4e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | ||||| || || || || ||||| || || | ||||| || || |||| Sbjct 79945 ATGCAGTGGTCACTGTACCTGCTTACTTCAATGACTCCCAGAGGCAAGCCACAAAGGATG 79886 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||| ||||||||||| | || ||||| |||||||| || || || || Sbjct 79885 CAGGCACCATTGCCGGTCTTAATGTCCTGCGGATTATCAATGAACCCACTGCTGCTGCGA 79826 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 | || |||||| | || || || Sbjct 79825 TAGCCTATGGTTTGGACAAAAA 79804 >seq257 Length=13053552 Score = 93.3 bits (102), Expect = 3e-13 Identities = 137/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 |||| ||| |||||||| || |||||||| ||||| || |||| || || || |||| Sbjct 6608296 AAAACGGTCGTGTAGAAATCATCGCCAATGATCAAGGAAACAGAATCACCCCTTCGTATG 6608355 Query 474438 TTTCTTTTAC---TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CA 474493 | | || || ||| || | ||| ||||| ||||||||| || | | ||||| | Sbjct 6608356 TGGCCTTCACCGCTGAGGGAGAGCGTCTCATTGGTGATGCTGCT-AAGAACCAGCTGACC 6608414 Query 474494 TCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGAT 474553 || || || | || ||| ||||||| || || |||||||| ||||| | ||||| || Sbjct 6608415 TCCAACCCCGAGAACACTGTTTTTGACGCAAAGAGATTGATCGGTCGCACTTTTGCCGAC 6608474 Query 474554 ACCACTGTCCA 474564 || |||| || Sbjct 6608475 TCCGCTGTGCA 6608485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267882582098420