Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq2278 127 2e-24 seq5240 113 5e-20 seq6693 84.2 3e-11 >seq2278 Length=6606680 Score = 127 bits (140), Expect = 2e-24 Identities = 564/883 (64%), Gaps = 19/883 (2%) Strand=Plus/Minus Query 160086 TCAACGTCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGC 160145 || || ||| ||| ||||| || |||| ||||| || | ||| || ||||||| Sbjct 4158034 TCGACTTCTGGGTCAAATTTGTTGGCGACAAGATGCTG--CTGCCTG-AGAATCCAGTTG 4157978 Query 160146 ACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTAC 160205 | || |||| || |||| || || | | | ||| | || ||||| || || || Sbjct 4157977 AGATCACCGGCACCATACACACACACTGCTCTTCTGTATCCTCCATTGCATGGGGGATAA 4157918 Query 160206 AGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCC 160265 ||| || ||| || || ||||| | ||| ||||||||| | | |||||| | Sbjct 4157917 GAAGCCCCCTTCCTTACATCTCCTTCATGGTAAACCCACTTCACCAGACGGGCTATGGAG 4157858 Query 160266 TGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATA 160325 | |||||| || ||||||||||||| | | || || || || | || ||||| Sbjct 4157857 TTCATGTCCGACGTGTCGTATTTGTTGTTGGGAGGGCTGGACCCTGGCATACCCGGCATG 4157798 Query 160326 CGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATG 160385 ||||| || | ||||| ||||| || || || ||||| |||||||| ||| || | Sbjct 4157797 CGCTGAAGAGATGCCCAGAGGTGCTCATCTGGACTGTATGTGTCCTTCTCCCACTCAAGC 4157738 Query 160386 AACTCTCCGATTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGAC 160441 || || ||| ||| || | | ||| || | ||| | || || Sbjct 4157737 AAAGCT----TTAGCCTCTGGGTTTTTAAACAAGTGCTCCACAAACTCTCTCGACAGCAC 4157682 Query 160442 AAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG-TCTTTGTCCTGAC 160500 |||||| || | || ||||| || || | || || || | | |||| | || | Sbjct 4157681 AAAGTAAGCATTTCCAGAGAACATTGGGGTACTGATGGGAGGGGGGCTCTTCTTAATGTC 4157622 Query 160501 CG-GTGTTAGACACCACTCCTTTCA-CCAGCGCGTGTCGCTTCTTCCACCTGACCATCTT 160558 | | |||| || | ||| | ||| | | || ||| | || |||| Sbjct 4157621 AGTCCGAATGACATCAGAC---TCAGTGACATTGTGGTGGTACTCCCAGCGAGCCTTCTT 4157565 Query 160559 GTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTT 160618 |||||| || | || | ||||| ||||| || | ||| ||| || |||| Sbjct 4157564 GTGCGGAGGAGTTGCCTCAGACTCTAAGCTGTTCCGTCCATTTAGCACTTTTAG-TGCTC 4157506 Query 160619 G-ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACT 160677 | || |||||| ||| || |||| || ||||| || || || || || | ||||| Sbjct 4157505 GCACCATCTCTTTGTTGGTTTTGATGGGGAAGTCAGTTCCACAGGTATTGATAAGGTACT 4157446 Query 160678 TCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGC 160737 |||| || | || || ||| || ||||||| || | || || || || || Sbjct 4157445 TCCACTTAACAGTCGAGTTCAACAGATCATTCATGCAGTTCAGGTCAGCTTGGACTCGAG 4157386 Query 160738 TCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACG 160797 ||| || || || || || |||| ||||| || |||||||| || || ||||| | Sbjct 4157385 ACCAAGAGGCATAAACAACCCTCTCCAGTTTGCTTGCCACAAACACATTTGGAAAACAAG 4157326 Query 160798 ACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGC 160857 |||| || | || | ||| | ||| | | | ||| |||||| ||||| | Sbjct 4157325 ACACAATGGCTTCCGCAGCCTTCATGAAGTTTTCTGGAGACTTCTTGTCCACATGCACAC 4157266 Query 160858 AATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTAT 160917 | |||| ||||| || | ||| | || ||||| | |||||| |||||||| ||||| | Sbjct 4157265 AGTACACATTCTGTGGTGTGTACACAGCTCTGAGGAGCCTCTCAAACATCTCGATCTTTT 4157206 Query 160918 GATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 ||||||||| || || ||||| || ||||| || |||| || Sbjct 4157205 CATGGATCACCATGGAATAGGCAATAGGAAAGTCCCTCTCTTC 4157163 Score = 111 bits (122), Expect = 2e-19 Identities = 573/898 (64%), Gaps = 32/898 (4%) Strand=Plus/Minus Query 160085 GTCAACGTCTTC---GTCGAATTTATTTGCGAACAGATGGTGA-GCGTTCTGTAGGATCC 160140 |||| || |||| ||| ||||| || || | ||||| ||| || ||| || |||| Sbjct 4196261 GTCATCGACTTCTGGGTCAAATTTGTTGGCATAAAGATGCTGATGC---CTG-AGAATCC 4196206 Query 160141 AGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCG 160200 ||| | || |||| || |||| || || | | ||||| | || ||||| || | Sbjct 4196205 AGTTGAGATCACCGGCACCATACACACACACTGCTCTTATGTATCCTCCATTGCATGGGG 4196146 Query 160201 GGTACAGA-GCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCT 160259 | || ||| || || || || || ||||| | || ||||||||| | | |||| Sbjct 4196145 GATA-AGATGCCCCCCTCCTTACATCTCCTTCATGATAAATCCACTTCACTAGACGGGCT 4196087 Query 160260 ATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCG 160319 || | | |||||| || |||||||||||| | | || || || || | || Sbjct 4196086 ATGGAGTTCATGTCTGACATGTCGTATTTGTTGTTGGGAGGGCTGGACCCTGGCATACCT 4196027 Query 160320 GGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCAT 160379 ||||| ||||| || || ||||| ||||| || || || ||||| |||||||| ||| Sbjct 4196026 GGCATTCGCTGAAGAGTTGCCCAAAGGTGCTCATCTGGACTGTATGTGTCCTTCTCCCAC 4195967 Query 160380 TCCATGAACTCTCCGATTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGT 160435 || || || || ||| ||| || | | ||| || | ||| | Sbjct 4195966 TCAATCAAAGCT----TTAGCCTCTGGGTTTTTAAACAAGTGCTCCACAAACTCTCTCGA 4195911 Query 160436 CACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG-TCTTTGT 160494 || |||||||| || | || ||||| || || | || || || | | |||| | Sbjct 4195910 CAGCACAAAGTAAGCATTTCCAGAGAACATTGGGGTACTGATGGGAGGGGGGCTCTTCTT 4195851 Query 160495 CCTGACCGGT--GTTAGACACC--ACTC-CTTTCACCAGCGCGTGTCGCTTCTTCCACCT 160549 || || || | |||| | |||| | || | || | | | ||| | Sbjct 4195850 AATG-CCAGTCCGAATGACATCAGACTCAGTGACATTA-----TGGTGGTATTCCCAGCG 4195797 Query 160550 GACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTT 160609 | |||||||| || | || | ||||| ||||| | || | ||| || Sbjct 4195796 AGCTTTCTTGTGCCCAGGAGTTGCCTCAGACTCTAAGCTGTTCCCTCCATTTAGCACTTG 4195737 Query 160610 CAGCTGCTTG-ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTA 160668 || |||| | || ||||| ||| || |||| || ||||| || || || || | Sbjct 4195736 TAG-TGCTCGCACCGTCTCTGTGTTGGTTTTGATGGGGAAGTCAGTTCCACAGGTATTGA 4195678 Query 160669 TCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCT 160728 | | ||||||||| | | ||| ||| |||| || ||||||| || | || || | Sbjct 4195677 TAAGGTACTTCCACTCAACAGTCAAGTCCAGCAGATCATTCATGCAGTTCAGGTCAGCTT 4195618 Query 160729 GCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTAT 160788 | || || ||| || || || || || |||| ||||| || |||||||| || || Sbjct 4195617 GGACTCGAGACCAAGAGGCATAAACAACCCTCTCCAGTTTGCTTGCCACAAACACATTTG 4195558 Query 160789 CGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCA 160848 ||||| || || || | || | ||| | ||| | | | ||| ||||| Sbjct 4195557 GAAAACAAGAAACAATGGCTTCCGCAGCCTTCATGAAGTTTTCTGGAGACTTCTTGTCCA 4195498 Query 160849 CGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCT 160908 | ||||| || |||| ||||| || | ||| | || ||||| | |||||| ||||||| Sbjct 4195497 CATGCACACAGTACACATTCTGTGGTGTGTACACAGCTCTGAGGAGCCTCTCAAACATCT 4195438 Query 160909 CTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACT 160966 | ||||| | ||||||||| || || ||||| || ||||| || |||| || | ||| Sbjct 4195437 CGATCTTCTCATGGATCACCATGGAATAGGCAATAGGAAAGTCCCTCTCTTCTCCACT 4195380 >seq5240 Length=617125 Score = 113 bits (124), Expect = 5e-20 Identities = 574/902 (64%), Gaps = 30/902 (3%) Strand=Plus/Plus Query 160085 GTCAACGTCTTC---GTCGAATTTATTTGCGAACAGATGGTGA-GCGTTCTGTAGGATCC 160140 |||| || |||| ||| ||||| || || || ||||| ||| || ||| || |||| Sbjct 247194 GTCATCGACTTCTGGGTCAAATTTGTTGGCAAAAAGATGCTGATGC---CTG-AGAATCC 247249 Query 160141 AGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCG 160200 ||| | || |||| || |||| || || | | ||||| | || ||||| || | Sbjct 247250 AGTTGAGATCACCGGCACCATACACACACACTGCTCTTATGTATCCTCCATTGCATGGGG 247309 Query 160201 GGTACAGAG-CTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCT 160259 | || ||| | || || || || ||||| | || ||||||||| | | |||| Sbjct 247310 GATA-AGATTCCCCCCTCCTTACATCTCCTTCATGATAAATCCACTTCACTAGACGGGCT 247368 Query 160260 ATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCG 160319 || | | |||||| || |||||||||||| | | || || || || | || Sbjct 247369 ATGGAGTTCATGTCTGACATGTCGTATTTGTTGTTGGGAGGGCTGGACCCTGGCATACCT 247428 Query 160320 GGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCAT 160379 ||||| ||||| || || ||||| ||||| || || || ||||| |||||||| ||| Sbjct 247429 GGCATTCGCTGAAGAGTTGCCCAAAGGTGCTCATCTGGACTGTATGTGTCCTTCTCCCAC 247488 Query 160380 TCCATGAACTCTCCGATTAACCT----GTCCCGCAGAACGTGAGTAACGTAGGATCTGGT 160435 || || || || ||| ||| || | | ||| || | ||| | Sbjct 247489 TCAATCAAAGCT----TTAGCCTCTGGGTTTTTAAACAAGTGCTCCACAAACTCTCTCGA 247544 Query 160436 CACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG-TCTTTGT 160494 || |||||||| || | || ||||| || || | || || || | | |||| | Sbjct 247545 CAGCACAAAGTAAGCATTTCCAGAGAACATTGGGGTACTGATGGGAGGGGGGCTCTTCTT 247604 Query 160495 CCTGAC---CGGTGTTAGACACCACTC-CTTTCACCAGCGCGTGTCGCTTCTTCCACCTG 160550 || | | | ||| || |||| | || | || | | | ||| | Sbjct 247605 AATGCCAGTCCGAATTACACCAGACTCAGTGACATTA-----TGGTGGTATTCCCAGCGA 247659 Query 160551 ACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTC 160610 | |||||||| || | || | |||||| ||||| || | ||| ||| Sbjct 247660 GCTTTCTTGTGCCCAGGAGTTGCCTCAGACTCTAGGCTGTTCTGTCCATTTAGCACTTTT 247719 Query 160611 AGCTGCTTG-ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTAT 160669 || |||| | || |||||| ||| || |||| || ||||| || || || || || Sbjct 247720 AG-TGCTCGCACCATCTCTGTGTTGGTTTTGATGGGGAAGTCAGTTCCACAGGTATTGAT 247778 Query 160670 CACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTG 160729 | ||||||||| | | || ||| ||| || ||||||| || | || || || Sbjct 247779 AAGGTACTTCCACTCGACAGTCGAGTCCATCAGATCATTCATGCAGTTCAGGTCAGCTTG 247838 Query 160730 CACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATC 160789 || || ||| || || || || || |||| |||| || |||||||| || || Sbjct 247839 GACTCGAGACCAAGAGGCATAAACAACCCTCTCCTGTTTGCTTGCCACAAACACATTTGG 247898 Query 160790 GAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCAC 160849 ||||| || || || | |||| ||| | ||| | | | ||| |||||| Sbjct 247899 AAAACAAGAAACAATGGCTTCCACAGCCCTCATGAAGTTTTCTGGAGACTTCTTGTCCAC 247958 Query 160850 GTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTC 160909 ||||| || |||| ||||| || | ||| | || ||||| | |||||| |||||||| Sbjct 247959 ATGCACACAGTACACATTCTGTGGTGTGTACACAGCTCTGAGGAGCCTCTCAAACATCTC 248018 Query 160910 TATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 ||||| | ||||||||| || || ||||| || ||||| || |||| || ||| || Sbjct 248019 GATCTTCTCATGGATCACCATTGAATAGGCAATAGGAAAGTCCCTCTCTTCTTCACTGAG 248078 Query 160970 GG 160971 || Sbjct 248079 GG 248080 >seq6693 Length=839357 Score = 84.2 bits (92), Expect = 3e-11 Identities = 192/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 160086 TCAACGTCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGC 160145 || || ||| ||| ||||| || |||| ||||| || | ||| || ||||||| Sbjct 24409 TCGACTTCTGGGTCAAATTTGTTGGCGACAAGATGCTG--CTGCCTG-AGAATCCAGTTG 24353 Query 160146 ACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTAC 160205 | || |||| || |||| || || | | | ||| | || ||||| || || || Sbjct 24352 AGATCACCGGCACCATACACACACACTGCTCTTCTGTATCCTCCATTGCATGGGGGATAA 24293 Query 160206 AGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCC 160265 ||| || ||| || || ||||| | ||| ||||||||| | | |||||| | Sbjct 24292 GAAGCCCCCTTCCTTACATCTCCTTCATGGTAAACCCACTTCACCAGACGGGCTATGGAG 24233 Query 160266 TGCATGTCGGAGGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATA 160325 |||||| | ||||||||||||| | | || || || || | || ||||| Sbjct 24232 GTCATGTCCGTCGTGTCGTATTTGTTGTTGGGAGGGCTGGACCCTGGCATACCTGGCATG 24173 Query 160326 CGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTT 160372 ||||| || | ||||| ||||| || || || ||||| |||||||| Sbjct 24172 CGCTGAAGAGATGCCCAAAGGTGCTCATCTGGACTGTATGTGTCCTT 24126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577169306615400