Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_020488.1 Length=38682 Score E Sequences producing significant alignments: (Bits) Value seq1950 152 1e-32 >seq1950 Length=44673 Score = 152 bits (168), Expect = 1e-32 Identities = 216/302 (72%), Gaps = 4/302 (1%) Strand=Plus/Minus Query 25786 AACAATCTCAGTAGTGTACTGATCTTGACCTTGCTGGTTCTGCCACTTGCGCGTGCGCAA 25845 |||||| || |||||||||||||||||||| | | ||| ||||| || ||||| |||| Sbjct 25127 AACAATTTCTGTAGTGTACTGATCTTGACCATCTTTGTTTTGCCATTTACGCGTTTGCAA 25068 Query 25846 CTTGCCTTCAATGTAAAGCTTTGAGCCTTTGCGTGTGTACTCGCCGGCCACCTCTGCCAA 25905 ||| || |||||||||| | |||||||||||| ||| || ||||| | || || | Sbjct 25067 CTTACCCTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTCACCGGCAATTTCAGCTAG 25008 Query 25906 CTTCCCGTATAACACAACACGGTGCCACTCTGTTTTTTCTACCGGCTGCCCTGTCTGCTT 25965 ||| || | | ||||||||||||| |||||||||||| ||| || || | ||| Sbjct 25007 CTTTCCAAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTTTTGCTCGCCAGTGTTCTT 24948 Query 25966 GTCTTTGTACTGCTCACTG--GTGGCAATGCTTAAATTTGCCACGGCGGTACCGTTAGGC 26023 |||| | | ||| ||| || || | | || || || || ||| ||| |||| Sbjct 24947 ATCTT--TCCAGCTTTCTGATGTTGCCAACGTAAAGTTAGCAACTGCGCCACCACTAGGT 24890 Query 26024 ATATACCTAACTTCCGGGTCCTGGCCTAAGTTGCCGACAATGATTACCTTGTTAATTCCG 26083 | | || ||||||| || || | || | ||||| | |||||| | || || |||||| Sbjct 24889 AAACACTTAACTTCAGGATCGTTACCAAGATTGCCAATGATGATTGCTTTATTGATTCCG 24830 Query 26084 CG 26085 || Sbjct 24829 CG 24828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123650645516120