Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1943 86.0 7e-12 >seq1943 Length=432286 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 || ||||||||||| || ||||| || ||||| || || ||||| || ||| ||||| Sbjct 423318 TCTCAGACGGAGACGGGCACACCTTACATGCTCTATAAAGATGCCTGCAACCGCAAGAGC 423377 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 || || |||| | || ||||||||| || ||||| ||||| || ||| | || ||| Sbjct 423378 AATCAGCAGAACCTTGGCACAATCAAGTGCAGCAATCTATGCACAGAGATTGTTGAATAC 423437 Query 76016 ACAGATAAGGATGAG 76030 || ||||||||| Sbjct 423438 ACCAGCAAGGATGAG 423452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596518034015200