Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq1950 174 5e-39 >seq1950 Length=44673 Score = 174 bits (192), Expect = 5e-39 Identities = 378/549 (69%), Gaps = 20/549 (4%) Strand=Plus/Plus Query 33152 TTTAAGGGTAA-ATTATGGCATCTCGAGGAATCAACAAAGTAATCATTTTGGGCACTCTC 33210 || ||||| || | ||||| ||| |||||||| |||| |||||| | |||| ||| Sbjct 24804 TTAAAGGGCAATAACATGGCGAGTCGCGGAATCAATAAAGCAATCATCATTGGCAATCTT 24863 Query 33211 GGACAAGACCCGGAAGTTAAATATATGCCTTCTGGCGGCGCTGTGTGCAATCTGT-CTCT 33269 || | || || |||||||| | | | ||| ||| ||||| || ||| | || | | | Sbjct 24864 GGTAACGATCCTGAAGTTAAGTGTTTACCTAGTGGTGGCGCAGT-TGCTAACTTTACGTT 24922 Query 33270 GGCAACATCAGAGCAGTGGAACGATAAAGCAACAGGGGAAAAGAAAGAGCAGACAGAATG 33329 |||||||||||| ||||| ||||| || || || | ||||| | |||||||| Sbjct 24923 GGCAACATCAGAAAGCTGGAAAGATAAGAACACTGGCGAGCAAAAAGAAAAAACAGAATG 24982 Query 33330 GCATCGCGTGGTTATCTTCGGAAAGCTGGCAGAGGTGGCTGGCGAATACCTGCGCAAAGG 33389 ||| || || | | |||| |||||||| || || | || || |||||||| |||||||| Sbjct 24983 GCACCGTGTTGCTGTCTTTGGAAAGCTAGCTGAAATTGCCGGTGAATACCTACGCAAAGG 25042 Query 33390 CTCTCAGGTGTATGTAGAAGGAAAATTACGTACTCGCAAATGGACAGATCAAAG-CGGTG 33448 |||||| || || | || || || || | || || |||||| || | ||||| ||| Sbjct 25043 CTCTCAAGTTTACATTGAGGGTAAGTTGCAAACGCGTAAATGG-CAAAACAAAGATGGTC 25101 Query 33449 TTGAAAAATACACTACTGAAATCGTCTTGCAGCCTATGAACGGCGTTATGCAAATGATTG 33508 || | |||||||| ||||| || || ||| | | | | || ||||| ||| | | Sbjct 25102 AAGATCAGTACACTACAGAAATTGTTTTACAGGGTTTTGATTGTGTAATGCAGATGTTGG 25161 Query 33509 GTGGTAAATCAAGTGATAATGGAAACCAACAG-TCACAGCA--GCGGCAAAAGTCAGGAA 33565 || | || ||| |||||||||| ||| ||| | |||| | ||| || || | Sbjct 25162 GTAG-CAAGCAA--GATAATGGAATCCAGCAGCGAAAAGCACCACAACAACAG-CAACAG 25217 Query 33566 GTAATAAGCAATCAGGATGGGGTAAACCTCAGCAGCCATCAAACACGTCAAAACCACC-G 33624 ||| || ||| || | |||| |||||| || |||| | | | | | || | Sbjct 25218 AAAATTCCTAACCAGTATCAG--AAACAACAGCAG-CAACAAATGCAACCACAGCGCCAG 25274 Query 33625 TCAAACGAACCGCCGATGGATTTTGATGATGATATCCCATTCTGAGTGA----TTTAAAT 33680 | || |||||||| |||||||| ||||||||||| || || | | | | |||||| Sbjct 25275 TATAATGAACCGCCAATGGATTTCGATGATGATATTCCGTTTTAAATCAATAGCTTAAAT 25334 Query 33681 AAATATAAC 33689 |||| |||| Sbjct 25335 AAATTTAAC 25343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152032314746220