Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4010 127 2e-24 >seq4010 Length=469592 Score = 127 bits (140), Expect = 2e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || |||||||| ||||||||||| || || || | ||| |||||||| ||||| || || Sbjct 111281 AGATCAGTCTCGGGGTTGTCACACTCGGGGCAGAGCACGAACTTGCGTATGAACCCGTCC 111340 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| | ||| || | ||| || ||||| |||||||| || ||||| | Sbjct 111341 AGCATGTCCTGCAGCTTGTTGGCCTGGTGCGACCCGTTCACGATGAAGCGCTCGTTCCGG 111400 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 | || | |||||| || ||||||||||| || |||||| |||| || || Sbjct 111401 GAGTCCAGCTGCGTCTGGGCGCCCAGCTCACAGCCGAAGAACTTGGTGGG 111450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412806807129095