Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5865 158 8e-34 seq257 138 7e-28 >seq5865 Length=143300 Score = 158 bits (174), Expect = 8e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | |||||||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 26034 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 26093 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || |||||||||| | ||||||||| | || Sbjct 26094 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 26153 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || |||||| | || | || | ||||| || Sbjct 26154 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACC 26213 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| |||||||| |||||||||||||| |||||||||||||| Sbjct 26214 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACAAAGATCTGCAT 26260 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | |||||||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 25578 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25637 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || |||||||||| | ||||||||| | || Sbjct 25638 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25697 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || |||||| | || | || | ||||| || Sbjct 25698 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACC 25757 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||| |||||||| |||||||||||||| || |||||||||||| Sbjct 25758 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 25805 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | |||||||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 25806 CCTCCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 25865 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | | |||| ||||| ||||| || |||||||||| | ||||||||| | || Sbjct 25866 AGGGTTGGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 25925 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || |||||| | || | || | ||||| || Sbjct 25926 ATGCCTTCTTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACC 25985 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||| |||||||| |||||||||||||| || |||||||||||| Sbjct 25986 TCAAGGGTGATGGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 26033 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 25364 CAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 25423 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || |||||||||| | ||||||||| | || | || || ||||| Sbjct 25424 TTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 25483 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | ||||| || |||| ||| ||||| Sbjct 25484 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGT 25543 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| |||||||||||||| || |||||||||||| Sbjct 25544 CTTCCCCGTGAGGGTCTTCACGAAGATCTGCATG 25577 >seq257 Length=13053552 Score = 138 bits (152), Expect = 7e-28 Identities = 160/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || || || | |||| |||||||| ||||| ||||| |||||| | || |||| Sbjct 5263135 AGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCT 5263076 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| |||||||||||||| || |||||||| | || | ||||| ||||| Sbjct 5263075 TCCAACTGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCC 5263016 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||||| || || || | ||| ||| ||| || |||| ||| |||| Sbjct 5263015 TGGATTTTAGCCTTGAC--ATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGG 5262958 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| || ||||||||||| Sbjct 5262957 TCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 5262924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325665351730385