Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq1950 84.2 6e-12 >seq1950 Length=44673 Score = 84.2 bits (92), Expect = 6e-12 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 || ||||| || || || |||||||| || || | ||| || |||| | || |||||| Sbjct 25042 CCTTTGCGTAGGTATTCACCGGCAATTTCAGCTAGCTTTCCAAAGACAGCAACACGGTGC 24983 Query 23599 CATTCGGTCTTTTCCTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACGTGGCC 23658 ||||| || ||||| || ||||||| || | ||| || |||||| |||| || || ||| Sbjct 24982 CATTCTGTTTTTTCTTTTTGCTCGCCAGTGTTCTTATCTTTCCAGCTTTCTGATGTTGCC 24923 Query 23659 A 23659 | Sbjct 24922 A 24922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139271762672980