Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4946 188 5e-42 seq2999 188 5e-42 seq3207 181 8e-40 seq978 113 3e-19 >seq4946 Length=1076177 Score = 188 bits (208), Expect = 5e-42 Identities = 931/1472 (63%), Gaps = 10/1472 (1%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || || || | |||||| || || ||||||||||| | ||||| || || ||||| Sbjct 1532 TTTGTCTGCAGCTGACACATTGAGGATTCCATTGGCATCAATGTCAAAGGTCACCTCAAT 1473 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 |||||||| | | | || ||||| |||||| || | ||| | |||| | || Sbjct 1472 CTGAGGGACACTGCGTGGGGCCGGTGGAATCCCTGTCAGCTCAAACTTGCCCAAAAGGTT 1413 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||| ||||| | | ||||| || | | || || Sbjct 1412 GTTGTCCTTGGTCATGGCTCTTTCTCCCTCATACACCTGGATCAGGACCCCGGGCTGGTT 1353 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAA 281654 ||||| || || || || ||||| | | ||| || || || ||||| | | | Sbjct 1352 GTCTGAGTAGGTGGTGAAGG-TCTGGGTCTGTTTGGTGGGGATGGTGGTGTTGCGCTTGA 1294 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | ||||| | ||| ||||| || || | || ||||| || || | ||||| | Sbjct 1293 TGAGGGCAGTCATGACACCTCCAGCCGTCTCAATGCCCAGAGACAGGGGGGCCACATCCA 1234 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | | || | || ||| | | ||| | ||||| || || |||| | Sbjct 1233 GCAGCAGTAGGTCCTGGACGTTCTCAGACTTGTCACCCATGAGAATGGCAGCCTGAACTG 1174 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 |||||||||| || || || || ||||| || | | || || | | ||||||| Sbjct 1173 CAGCACCATAGGCCACTGCCTCGTCAGGGTTGATGCCCTTGTTCAGGTCCCTTCCATTGA 1114 Query 281835 AAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | |||| || | | ||| | ||||| || | | || ||||| || || ||| Sbjct 1113 AGAAATCCTGCAGCTGCT-TCTGGATTTTAGGGATTCTGGTGGAACCTCCCACCAAGACA 1055 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 || ||||| | ||||| || |||| || | ||| | |||| || || || ||| Sbjct 1054 ATGTCATGGATCTGTGCCTTGTCCAACTTGGCATCTCTCAGGGCTTTCTCCACAGGCTCA 995 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || | || || | ||| || | || || || |||||| || | | | Sbjct 994 AGGGTTCCCCTGAAGAGGTCGGAGTTCATCTCCTCAAAGCGAGCTCTGGTGATGGAGGTG 935 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 | ||||||| || || | | ||| || | |||||| | | || | || || Sbjct 934 TAGAAATCAATGCCCTCATAAAGAGAGTCGATTTCAATGCTGGCCTGGGAGCTGGAGGAC 875 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATT 282131 |||| | || || | ||||||||||| | || || | | || | ||| | | Sbjct 874 AGTGTCCTCTTGGCCCTCTCACATGCTGTGCGCAGCCTCCTCAGTGCCCTCTTGTTC--T 817 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 282191 | | | ||| | ||| |||| |||||||| || || ||| | | || | |||| Sbjct 816 GGCTAATGTCTTTCTTAAATTTCCTCTTGAACTCCTCCACAAAGTGATTCACCATGCGAT 757 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||||||| ||||| || |||| | ||| | ||| | || ||| | || | || | | Sbjct 756 TATCAAAGTCTTCCCCACCCAGGTGAGTGTCTCCAGCAGTGGCTTTGACCTCAAAGATGC 697 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 ||||||||| | | | || ||||||| || |||||||| | ||||| || || | Sbjct 696 CATCTTCAATGGTTAGGATAGAAACATCAAAAGTACCACCACCTAGGTCAAAGATGAGGA 637 Query 282312 CATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 |||| | | ||| | | ||| || || ||||| |||| || || || || || Sbjct 636 CATTACGCTCACCGGTCGT-GCCTTTGTCCAGTCCATAAGCAATGGCTGCTGCCGTGGGC 578 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 || || || || |||| ||||| || ||||| || || || || || ||||| || Sbjct 577 TCGTTGATGATCCTCAGCACATTCAGTCCAGCGATCACGCCAGCGTCCTTGGTGGCCTGG 518 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 | || || || || || || |||||||| || || || |||| ||||||| | ||| Sbjct 517 CGCTGGGAGTCATTGAAGTAAGCAGGAACGGTGATGACTGCATTGGTTACTTTCTGTCCC 458 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 || || || || | | ||||| || | | ||| || || |||| |||||| Sbjct 457 ATGTAGGCCTCAGCAATCTCCTTCATCTTGACCAGGACCATGGAGGAGATTTCTTCTGGG 398 Query 282551 GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA 282610 | || ||| ||| || || |||| || | || || ||| || | Sbjct 397 TTAAATGTTTTGTTCTCACCTTTGTACTCCACTTGAACTTTGGGCTTTCCCCCATCACTG 338 Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 282670 || ||| | || ||||| | ||||| || || |||||| |||| ||| | || Sbjct 337 ATGACTGTGAAGGGCCAGTGCTTCATGTCAGACTGAACAACGGAATCATCAAACTTTCGT 278 Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 ||||| | || || |||||||| | || ||| | || || | || | |||| ||| Sbjct 277 CCAATGAGACGCTTGGCATCAAAGACGGTGTTGTTGGGGTTCATGGCCACCTGATTTTTT 218 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 || ||||| |||||||| ||||| ||||| || | ||||| || || || | Sbjct 217 GCAGCATCACCAATCAGCCTCTCTGTGTCTGTGAAGGCCACATAACTCGGGGTGGTTCTG 158 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850 || || || || || ||||| || || ||||| |||| || | || || || || Sbjct 157 TTGCCCTGGTCGTTGGCAATGATCTCCACTTTTCCATGCTGGAACACCCCAACGCAGGAG 98 Query 282851 AAAGTTGTTCCTAAATCAATACCAATAGCAAT 282882 | || || || | ||||||||||| | ||| Sbjct 97 TAGGTGGTACCCAGGTCAATACCAATGGAAAT 66 >seq2999 Length=180986 Score = 188 bits (208), Expect = 5e-42 Identities = 931/1472 (63%), Gaps = 10/1472 (1%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || || || | |||||| || || ||||||||||| | ||||| || || ||||| Sbjct 166663 TTTGTCTGCAGCTGACACATTGAGGATTCCATTGGCATCAATGTCAAAGGTCACCTCAAT 166604 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 |||||||| | | | || ||||| |||||| || | ||| | |||| | || Sbjct 166603 CTGAGGGACACTGCGTGGGGCCGGTGGAATCCCTGTCAGCTCAAACTTGCCCAAAAGGTT 166544 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || ||| ||||| | | ||||| || | | || || Sbjct 166543 GTTGTCCTTGGTCATGGCTCTTTCTCCCTCATACACCTGGATCAGGACCCCGGGCTGGTT 166484 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAA 281654 ||||| || || || || ||||| | | ||| || || || ||||| | | | Sbjct 166483 GTCTGAGTAGGTGGTGAAGG-TCTGGGTCTGTTTGGTGGGGATGGTGGTGTTGCGCTTGA 166425 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | ||||| | ||| ||||| || || | || ||||| || || | ||||| | Sbjct 166424 TGAGGGCAGTCATGACACCTCCAGCCGTCTCAATGCCCAGAGACAGGGGGGCCACATCCA 166365 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | | || | || ||| | | ||| | ||||| || || |||| | Sbjct 166364 GCAGCAGTAGGTCCTGGACGTTCTCAGACTTGTCACCCATGAGAATGGCAGCCTGAACTG 166305 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 |||||||||| || || || || ||||| || | | || || | | ||||||| Sbjct 166304 CAGCACCATAGGCCACTGCCTCGTCAGGGTTGATGCCCTTGTTCAGGTCCCTTCCATTGA 166245 Query 281835 AAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | |||| || | | ||| | ||||| || | | || ||||| || || ||| Sbjct 166244 AGAAATCCTGCAGCTGCT-TCTGGATTTTAGGGATTCTGGTGGAACCTCCCACCAAGACA 166186 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 || ||||| | ||||| || |||| || | ||| | |||| || || || ||| Sbjct 166185 ATGTCATGGATCTGTGCCTTGTCCAACTTGGCATCTCTCAGGGCTTTCTCCACAGGCTCA 166126 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || | || || | ||| || | || || || |||||| || | | | Sbjct 166125 AGGGTTCCCCTGAAGAGGTCGGAGTTCATCTCCTCAAAGCGAGCTCTGGTGATGGAGGTG 166066 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 | ||||||| || || | | ||| || | |||||| | | || | || || Sbjct 166065 TAGAAATCAATGCCCTCATAAAGAGAGTCGATTTCAATGCTGGCCTGGGAGCTGGAGGAC 166006 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATT 282131 |||| | || || | ||||||||||| | || || | | || | ||| | | Sbjct 166005 AGTGTCCTCTTGGCCCTCTCACATGCTGTGCGCAGCCTCCTCAGTGCCCTCTTGTTC--T 165948 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 282191 | | | ||| | ||| |||| |||||||| || || ||| | | || | |||| Sbjct 165947 GGCTAATGTCTTTCTTAAATTTCCTCTTGAACTCCTCCACAAAGTGATTCACCATGCGAT 165888 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 ||||||| ||||| || |||| | ||| | ||| | || ||| | || | || | | Sbjct 165887 TATCAAAGTCTTCCCCACCCAGGTGAGTGTCTCCAGCAGTGGCTTTGACCTCAAAGATGC 165828 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 ||||||||| | | | || ||||||| || |||||||| | ||||| || || | Sbjct 165827 CATCTTCAATGGTTAGGATAGAAACATCAAAAGTACCACCACCTAGGTCAAAGATGAGGA 165768 Query 282312 CATT-CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 |||| | | ||| | | ||| || || ||||| |||| || || || || || Sbjct 165767 CATTACGCTCACCGGTCGT-GCCTTTGTCCAGTCCATAAGCAATGGCTGCTGCCGTGGGC 165709 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 || || || || |||| ||||| || ||||| || || || || || ||||| || Sbjct 165708 TCGTTGATGATCCTCAGCACATTCAGTCCAGCGATCACGCCAGCGTCCTTGGTGGCCTGG 165649 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCA 282490 | || || || || || || |||||||| || || || |||| ||||||| | ||| Sbjct 165648 CGCTGGGAGTCATTGAAGTAAGCAGGAACGGTGATGACTGCATTGGTTACTTTCTGTCCC 165589 Query 282491 ATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGA 282550 || || || || | | ||||| || | | ||| || || |||| |||||| Sbjct 165588 ATGTAGGCCTCAGCAATCTCCTTCATCTTGACCAGGACCATGGAGGAGATTTCTTCTGGG 165529 Query 282551 GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTA 282610 | || ||| ||| || || |||| || | || || ||| || | Sbjct 165528 TTAAATGTTTTGTTCTCACCTTTGTACTCCACTTGAACTTTGGGCTTTCCCCCATCACTG 165469 Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTA 282670 || ||| | || ||||| | ||||| || || |||||| |||| ||| | || Sbjct 165468 ATGACTGTGAAGGGCCAGTGCTTCATGTCAGACTGAACAACGGAATCATCAAACTTTCGT 165409 Query 282671 CCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTG 282730 ||||| | || || |||||||| | || ||| | || || | || | |||| ||| Sbjct 165408 CCAATGAGACGCTTGGCATCAAAGACGGTGTTGTTGGGGTTCATGGCCACCTGATTTTTT 165349 Query 282731 GCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGA 282790 || ||||| |||||||| ||||| ||||| || | ||||| || || || | Sbjct 165348 GCAGCATCACCAATCAGCCTCTCTGTGTCTGTGAAGGCCACATAACTCGGGGTGGTTCTG 165289 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTA 282850 || || || || || ||||| || || ||||| |||| || | || || || || Sbjct 165288 TTGCCCTGGTCGTTGGCAATGATCTCCACTTTTCCATGCTGGAACACCCCAACGCAGGAG 165229 Query 282851 AAAGTTGTTCCTAAATCAATACCAATAGCAAT 282882 | || || || | ||||||||||| | ||| Sbjct 165228 TAGGTGGTACCCAGGTCAATACCAATGGAAAT 165197 Score = 185 bits (204), Expect = 7e-41 Identities = 921/1457 (63%), Gaps = 10/1457 (1%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| || || ||||||||||| | ||||| || || ||||| |||||||| | | Sbjct 160215 CACATTGAGGATTCCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGGACACTGCG 160274 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 | || ||||| |||||| || | ||| | |||| | || || || || || | Sbjct 160275 TGGGGCCGGTGGAATCCCTGTCAGCTCAAACTTGCCCAAAAGGTTGTTGTCCTTGGTCAT 160334 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || ||| ||||| | | ||||| || | | || || ||||| || || || Sbjct 160335 GGCTCTTTCTCCCTCATACACCTGGATCAGGACCCCGGGCTGGTTGTCTGAGTAGGTGGT 160394 Query 281611 AAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || ||||| | | ||| || || || ||||| | | || | ||||| | Sbjct 160395 GAAGG-TCTGGGTCTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGGGCAGTCATGA 160453 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 ||| ||||| || || | || ||||| || || | ||||| | || | | | | Sbjct 160454 CACCTCCAGCCGTCTCAATGCCCAGAGACAGGGGGGCCACATCCAGCAGCAGTAGGTCCT 160513 Query 281730 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 | | || ||| | | ||| | ||||| ||||| |||| ||||||||||| || | Sbjct 160514 GGACGTTCTCAGACTTGTCACCCATGAGAATGGCTGCCTGAACTGCAGCACCATAGGCCA 160573 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 281849 | || || ||||| || | | || || | | |||||||| |||| || Sbjct 160574 CTGCCTCGTCAGGGTTGATGCCCTTGTTCAGGTCCCTTCCATTGAAGAAATCCTGCAGCT 160633 Query 281850 GTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 | | ||| | ||||| || | | || ||||| || || ||||| ||||| | |||| Sbjct 160634 GCT-TCTGGATTTTAGGGATTCTGGTGGAACCTCCCACCAAGACAATGTCATGGATCTGT 160692 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 | || || | || | ||| | |||| || || || ||||| | || || Sbjct 160693 GCCTTGTCAAACTTGGCATCTCTCAGGGCTTTCTCCACAGGCTCAAGGGTTCCCCTGAAG 160752 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCT 282028 | ||| || | || || || |||||| || | | | | ||||||| || Sbjct 160753 AGGTCGGAGTTCATCTCCTCAAAGCGAGCTCTGGTGATGGAGGTGTAGAAATCAATGCCC 160812 Query 282029 TCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCA 282088 || | | ||| || | |||||| | | || | || || |||| | || || Sbjct 160813 TCATAAAGAGAGTCGATTTCAATGCTGGCCTGGGAGCTGGAGGACAGTGTCCTCTTGGCC 160872 Query 282089 CGTTCACATGCTGTCCTTAGTCTTCGTAAGGC--TTTTGCTGATTGATTCAAATCTGTTT 282146 | ||||||||||| | || || | | || | ||| | || | | ||| | | Sbjct 160873 CTCTCACATGCTGTGCGCAGCCTCCTCAGTGCCCTCTTGTTC--TGGCTAATGTCTTTCT 160930 Query 282147 TATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCAC 282206 || |||| |||||||| || || ||| | | || | ||||||||||| ||||| | Sbjct 160931 TAAATTTCCTCTTGAACTCCTCCACAAAGTGATTCACCATGCGATTATCAAAGTCTTCCC 160990 Query 282207 CTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACA 282266 | |||| | ||| | ||| | || ||| | || | || | |||||||||| | | Sbjct 160991 CACCCAGGTGAGTGTCTCCAGCAGTGGCTTTGACCTCAAAGATGCCATCTTCAATGGTTA 161050 Query 282267 AAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTTTG 282325 | || ||||||| || |||||||| | ||||| || || ||||| | | | Sbjct 161051 GGATAGAAACATCAAAAGTACCACCACCTAGGTCAAAGATGAGGACATTACGCTCACCGG 161110 Query 282326 TCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 || | | ||| || || ||||| |||| || || || || || || || || || ||| Sbjct 161111 TCGT-GCCTTTGTCCAGTCCATAAGCAATGGCTGCTGCCGTGGGCTCGTTGATGATCCTC 161169 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||| || ||||| || || || || || ||||| || | || || || || Sbjct 161170 AGCACATTCAGTCCAGCGATCACGCCAGCGTCCTTGGTGGCCTGGCGCTGGGAGTCATTG 161229 Query 282446 AAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCT 282505 || || |||||||| || || || |||| ||||||| | ||| || || || || Sbjct 161230 AAGTAAGCAGGAACGGTGATGACTGCATTGGTTACTTTCTGTCCCATGTAGGCCTCAGCA 161289 Query 282506 GTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGAT 282565 | | ||||| || | | ||| || || |||| |||||| | || ||| Sbjct 161290 ATCTCCTTCATCTTGACCAGGACCATGGAGGAGATTTCTTCTGGGTTAAATGTTTTGTTC 161349 Query 282566 TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGC 282625 ||| || || |||| || | || || ||| || | || ||| | || ||| Sbjct 161350 TCACCTTTGTACTCCACTTGAACTTTGGGCTTTCCCCCATCACTGATGACTGTGAAGGGC 161409 Query 282626 CAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTT 282685 || | ||||| || || |||||| |||| ||| | || ||||| | || || Sbjct 161410 CAGTGCTTCATGTCAGACTGAACAACGGAATCATCAAACTTTCGTCCAATGAGACGCTTG 161469 Query 282686 GCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATC 282745 |||||||| | || ||| | || || | || | |||| ||| || ||||| |||||| Sbjct 161470 GCATCAAAGACGGTGTTGTTGGGGTTCATGGCCACCTGATTTTTTGCAGCATCACCAATC 161529 Query 282746 AGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTC 282805 || ||||| ||||| || | ||||| || || || | || || || || || Sbjct 161530 AGCCTCTCTGTGTCTGTGAAGGCCACATAACTCGGGGTGGTTCTGTTGCCCTGGTCGTTG 161589 Query 282806 GCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAA 282865 ||||| || || ||||| |||| || | || || || || | || || || | Sbjct 161590 GCAATGATCTCCACTTTTCCATGCTGGAACACCCCAACGCAGGAGTAGGTGGTACCCAGG 161649 Query 282866 TCAATACCAATAGCAAT 282882 ||||||||||| | ||| Sbjct 161650 TCAATACCAATGGAAAT 161666 >seq3207 Length=2023586 Score = 181 bits (200), Expect = 8e-40 Identities = 464/697 (67%), Gaps = 21/697 (3%) Strand=Plus/Minus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 |||| ||||| ||||| || |||| | || | |||| || ||| | || | || Sbjct 1816298 CGATCGTCAAAGTCTTCCCCACCCAGGTGTGTGTCCCCTGCTGTGGCTTTCACCTCAAAT 1816239 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||||||||| | | || | | |||||| || || || || | ||||| || Sbjct 1816238 ATTCCATCTTCTATTGCCAGGACTGACACATCAAAAGTACCCCCTCCAAGGTCAAAGATC 1816179 Query 282308 AGTACATTCATTTCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 |||||| ||| ||| ||| ||| || |||||||| || | | || Sbjct 1816178 GATACATTGCGTTCCC---CTTTGTTCCCTTTGTCCAGACCATAGGCGGATG-----GCT 1816127 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || || ||| | || | || |||||||| || ||||| || ||||||||| | || Sbjct 1816126 GTCGGCTCACTGATGACCCTAAAAACATTTAGTCCAGCGATGACTCCTGCATCCTCGGTT 1816067 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA--CTT 282482 || || | ||||| || ||||| || || || || || || || || | ||||| ||| Sbjct 1816066 GCCTGGCGCTGTGAGTCATTAAAGTAAGCTGGGACCGTGATGACAGCGT-TGTTAACCTT 1816008 Query 282483 CTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTT 282542 | | |||| | | ||| | | | | ||||||| || | ||| || || | || Sbjct 1816007 GTGTCCCAAGA-AGGCGTCCGAAATCTCTCTCATTTTCACCAAGACCATGGAGGAGACTT 1815949 Query 282543 GTTCTGGA--GAATATTGCTTGGATTCAT-TTTGATATGATACTTCAAAATATGGTTTAT 282599 || ||| ||| || || | ||| |||| | | |||| | | ||||| Sbjct 1815948 CCTCAGGATAGAAGGTT--TTAGTTTCTCCTTTGTGCTCA-ACTTGTACTTTGGGTTTTC 1815892 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 || | || ||| || ||||| |||||| |||||| ||||| | ||| | |||||| Sbjct 1815891 CACTATCACTAACCACGTTAAAAGGCCAAAGTTTCATGTCTGACCGGACAATGGGGTCAT 1815832 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 ||| || ||||| | ||||| |||||||| | ||||||| | || || | ||| Sbjct 1815831 CAAACCTACTGCCAATAAGACGTTTGGCATCAAATACAGTATTGTTAGGGTTCATGGCAA 1815772 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 |||| | |||||||||||||||||| || ||||| ||||| || | ||||| | Sbjct 1815771 CTTGGTTTTTGGCTGCATCTCCAATTAGTCTCTCTGTGTCTGTGAAGGCCACATAGCTGG 1815712 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | | ||| | || || || ||||| ||||| |||||||||||||||| ||| |||| | Sbjct 1815711 GTGATGTCCCGTTTCCCTGGTCATTGGCAATTATTTCAACTTTACCATGTTGAAATACCC 1815652 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 282876 |||||| | | | |||||| | |||||| ||||| Sbjct 1815651 ATACACATGAATAGGGTGTTCCAAGATCAATTCCAAT 1815615 >seq978 Length=374410 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | |||||| || | ||||||||||| |||||||| ||||| | || ||| Sbjct 79804 TTTTTGTCCAAACCATAGGCTATCGCAGCAGCAGTGGGTTCATTGATAATCCGCAGGACA 79863 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||||||| ||||| | |||||||| || |||||||| || || || || || || || Sbjct 79864 TTAAGACCGGCAATGGTGCCTGCATCCTTTGTGGCTTGCCTCTGGGAGTCATTGAAGTAA 79923 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 ||||| ||||| | || |||| Sbjct 79924 GCAGGTACAGTGACCACTGCAT 79945 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 281417 TTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATT 281476 || ||||| |||| ||||| || || ||||||||||| | ||||| || || |||||| Sbjct 77139 TTGTCAGCAGCAGAGACATTGAGGATGCCATTGGCATCGATGTCAAAGGTCACCTCAATT 77198 Query 281477 TGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTA 281536 || || |||||||| ||||||| ||||| || || | |||| |||| || ||||| Sbjct 77199 TGTGGAACCCCTCTTGGAGCAGGGGGGATGCCAGTCAGCTCAAATTTTCCAAGGATATTA 77258 Query 281537 TTATCTTTAGTGAATTTTCGTTCACCCTC 281565 ||||| || || | || |||||| || Sbjct 77259 TTATCCTTTGTCATAGCTCTTTCACCTTC 77287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740290902722790