Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4418 86.0 1e-11 >seq4418 Length=917125 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| ||| | ||||||||||| || |||||||| | || || | || ||||| Sbjct 96130 GATAGCGTCAGCGCTGTGGTGGTACTACATCTCTAAAGGAGTGGAGTATCTGGACACGGT 96189 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 || ||||| || |||| ||||| || ||||| || || | ||||| ||||| || | Sbjct 96190 ATTCTTCATCCTGAGGAGGAAGTTCAACCAGGTCAGCTTCCTGCACGTCTATCACCACTG 96249 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 |||||||| | | | ||| | ||||| || ||| | |||| || ||| Sbjct 96250 CACTATGTTCATCCTCTGGTGGATCGGCATCAAGTGGGTCCCCGGTGGACAA 96301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981740211644185