Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5865 136 4e-27 seq257 127 2e-24 seq1943 95.1 1e-14 >seq5865 Length=143300 Score = 136 bits (150), Expect = 4e-27 Identities = 153/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || | ||||| | || || ||||||||||| Sbjct 25836 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTTGGACCA-TCTTCCAGCTGCTTGCC 25894 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || || |||||||| ||||| |||||| ||| Sbjct 25895 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTT 25954 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | | |||||| || | ||||| ||| || || || || || Sbjct 25955 GACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGT 26014 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 26015 CTTCACGAAGATCTGCATGCCT 26036 Score = 132 bits (146), Expect = 5e-26 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| ||| | || || ||||||||||| Sbjct 25380 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCTTCCAGCTGCTTGCC 25438 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || || |||||||| ||||| |||||| ||| Sbjct 25439 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTT 25498 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | | |||||| || | ||||| ||| || || || || || Sbjct 25499 GACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGT 25558 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 25559 CTTCACGAAGATCTGCATGCCT 25580 Score = 132 bits (146), Expect = 5e-26 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 25608 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 25666 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || || |||||||| ||||| |||||| ||| Sbjct 25667 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTT 25726 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | | |||||| || | ||||| ||| || || || || || Sbjct 25727 GACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGT 25786 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 25787 CTTCACGAAGATCTGCATGCCT 25808 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 26064 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 26122 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || || |||||||| ||||| |||||| ||| Sbjct 26123 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTT 26182 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| | | |||||| || | ||||| ||| || || || || || Sbjct 26183 GACGTTCTCAATGGTGTCGCTTGCCTCCACCTCAAGGGTGATGGTCTTCCCCGTGAGGGT 26242 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 26243 CTTCACAAAGATCTGCAT 26260 >seq257 Length=13053552 Score = 127 bits (140), Expect = 2e-24 Identities = 153/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGC 133514 ||| | |||||| || ||||| || ||||| ||| || | | |||| || || | | Sbjct 5263127 ATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGG--ATAGGGTACGACCATCTTCCAAC 5263070 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || || ||||||||||| || |||||||| || ||||| ||| Sbjct 5263069 TGCTTACCGGCGAAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATT 5263010 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| ||||| |||||||||| || | ||||| ||| ||||| Sbjct 5263009 TTAGCCTTGACATTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCA 5262950 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 5262949 GTCAGGGTCTTCACGAAGATCTGCAT 5262924 >seq1943 Length=432286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||||||| | | |||| || || ||||| | ||| ||||||||||| ||||| ||| Sbjct 423452 CTCATCCTTGCTGGTGTATTCAACAATCTCTGTGCATAGATTGCTGCACTTGATTGTGCC 423393 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 | ||||| ||||||||||||| |||||| || || || || |||||||| ||| ||| Sbjct 423392 AAGGTTCTGCTGATTGCTCTTGCGGTTGCAGGCATCTTTATAGAGCATGTAAGGTGTGCC 423333 Query 148970 AGTTTCC 148976 || ||| Sbjct 423332 CGTCTCC 423326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379014314600