Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_024791.1 Length=50440 Score E Sequences producing significant alignments: (Bits) Value seq204 187 8e-43 >seq204 Length=1493 Score = 187 bits (206), Expect = 8e-43 Identities = 799/1231 (65%), Gaps = 49/1231 (4%) Strand=Plus/Minus Query 17493 TCAAAGTTGATAATCTTCTCTTGGAAGATACGACCTGCTGCATTCTGGAGTTGTTGAACC 17552 |||||| || |||| |||||||| |||||||| || || ||||| || | ||||| Sbjct 1401 TCAAAGCTGGTAATTTTCTCTTGAAAGATACGGCCAGCAGCATTTTGCAACGACTGAACT 1342 Query 17553 TCAAATGCTGTTTTCTCACCGGGAGTACGAATACCCATAGCTTCACGAGGAGCACCTGCA 17612 || || ||||| |||||||| | || ||||| |||||||| ||||| || || || | Sbjct 1341 TCGAAGGCTGTCTTCTCACCTGCTGTGCGAATCCCCATAGCCTCACGTGGTGCGCCAGAG 1282 Query 17613 AACTCTTCCATCTTAGCTTCCA-AGATTTGGATTTGCATATCTGCTTGTAGA--GCTTGT 17669 || |||||| || |||| | ||| |||| || ||| || | || | Sbjct 1281 TACAGTTCCATTTTTTCTTCAAGAGAGCCA-ATTTCGTTAGACGCTGCTATAATGCCGTT 1223 Query 17670 GTGTTAGGAGCC-ATCATTTCCACATCACCGTCTCCGTTAATGTAGATTTGTTCCATTGG 17728 | | ||| | | | || ||||| | ||| ||| || | | ||| Sbjct 1222 CAGGTTCTTGCCTAGCTCAGCTACGTCACCATTCTCGTCGGTGTGTATCTCAGCACCTGG 1163 Query 17729 TCCCCATACAAACTCTTCCACATCGCCTTTAACTTTCATAGGTGGAAACGCAATCAAGTC 17788 ||||||||||||||||| || || || |||| | ||||| | || |||||| Sbjct 1162 GCCCCATACAAACTCTTCTACCTCACCCTTAATGACAAGCGGTGGGTGCACACACAAGTC 1103 Query 17789 AAATACGTCAGCCTTCAAGTTCTCCAAGTGGTCAATACGATATTGCATACCAACCAAGTT 17848 | | ||||||| || | |||||| | |||||||||||| |||||||||||||||||||| Sbjct 1102 CATTGCGTCAGCTTTAAGGTTCTCAAGGTGGTCAATACGGTATTGCATACCAACCAAGTT 1043 Query 17849 ATCTAAAGGCCCCATAGCATACAAGTTGTCTTGACGAATACGCCAACCACAATGGAAGAT 17908 || ||||| |||||||| ||| ||| || | || ||||||| ||| ||| | | Sbjct 1042 GTCCAAAGGTCCCATAGCCCACAGGTTATCAGGTCGTGTACGCCACCCAACATGACATAA 983 Query 17909 TGGAGCTTGTGCAAACCATGCTTCGTTCTCTTTCTCTTCTGCTACAAACATG----CGGT 17964 || |||| |||| | | | | | |||||| ||| ||||| |||| Sbjct 982 GGGGGCTTTACCAAAGTAAGACTTGAT---AGGCTCTTC-CCTAACTACATGGCAACGGT 927 Query 17965 CAATGATTGTGATTTTCATATTACGCTTGAATGTACCTGATTGGGTATCGTGGTAATCTC 18024 ||| |||||| || | || ||| | | ||| | || || |||||| || | Sbjct 926 CAAAGATTGTTATGACTACGTTTGACTTCAGTTCACCAGTTTCTGTGCTGTGGTAGTCGC 867 Query 18025 CATAGAACGTTAGAACCTCAACGT--TAGGACTCATAAAGTAATCGTAAAGGTTGCCAAA 18082 |||||||| || | ||| || | | || | | |||| ||||| ||||||||||| Sbjct 866 CATAGAACTCAAGTATCTCTACATAGTCAGATTGGT--AGTATTCGTAGAGGTTGCCAAA 809 Query 18083 TCCGTCCATAGAGAAGCCTACAGCCTTTTCACAATCTTCCCTAGTATAAGTCCCTAG--C 18140 |||||||| ||| |||| ||||||| || | ||||| | ||||| ||||| | Sbjct 808 TCCGTCCACAGAATAGCCCTCAGCCTTATCGAAGTCTTCTATGCTATAACCACCTAGGAC 749 Query 18141 CCACGTCGAAACTCGTCTCTAC-GCTCGATTGCGGAAGC-GAGAGAGGCATTCTCTGGTT 18198 | | || | | | | | |||| | || | | ||||| ||| ||||||| | || Sbjct 748 CTTCCTC-ATAGTTG-CCCTACGGGCCGCATAC-GAAGCATAGA-AGGCATTGTTAGGCC 693 Query 18199 GGTCTTCCTCCATCTGGAGTAGTTCACCTTC-GTTAAGCACACTGCGGATAATTTTAGGT 18257 || || |||||| ||| ||||| | ||| | | ||| || | ||| || | Sbjct 692 ACTCCTCTGCCATCTTCTGTATCTCACCAACAGTTTTG-ATACTTCGTACAATCTTGAAT 634 Query 18258 GAATGAGCGAAGTCTACAGCAACAGGGTTAAAGACAATATCTTTAGGGTCAATACGGACA 18317 || | | | ||| | ||| |||| ||| ||||| || || |||||||| Sbjct 633 GACTCATCAAAGGTTGAGGCAGTGGGGTCAAACACAATGTCCAACGGTGAAATACGGAAC 574 Query 18318 GGACGAGGACCGAAGTAAGTATCAAGA-GTGGCACCGGATTCTTCATCTT-TGGTTGTCT 18375 ||| || |||| | || | ||| | || | || | ||| |||| | | || | Sbjct 573 ACACGGGGTCCGATGAAACCAGCAACACGTTG-GCCTGTGTCTGGGTCTTCTCG--GTAT 517 Query 18376 CCTTCACA-TACTCTACCGTTGCAAAACAGTTACCATAATCAATATAGTCCAACAGAAGT 18434 || | | ||||| || || || ||||||||| || ||||| || |||| ||| Sbjct 516 TGAGCAGAGAAGTCTACAGTAGCGAATGCGTTACCATAGTCGATATAATCTAACAACAGT 457 Query 18435 TGGCTCATGATTACACGGAAATCAGATTCCTTAACCTTGTTATCCATGTATTGTTGGATA 18494 | ||| | |||||| | || | ||||| | |||||| || ||| Sbjct 456 TTAGACATCTCTGTACGGAAGTGGCCCTCACGAGTTTTGTTCTTCATGTAGGCTTCAATA 397 Query 18495 GCA-----TCTCGTTTTG----CCTCATCTTTGAGAGTTTTACCTTCCCACTTTAACCAA 18545 ||| | || | ||| | || || || ||| | | | ||||| ||||| Sbjct 396 GCACGGGTTTTCTTCTTGGTGCCATCGTCCTT-AGAATAT--GCCTCCCAACGCAACCAG 340 Query 18546 CGCTCATTTGGAAACAATGCGCTGATA--TAGTTGGAGTGTAGGTTATCTCGAATCTGAC 18603 ||||| || || | | || || | ||||||||||| ||||| ||||| || || | Sbjct 339 TCGTCATTAGGGAAGA--GGGCAGACAAGTAGTTGGAGTGCAGGTTGTCTCGTATTTGGC 282 Query 18604 ATAACTTAGGTAAGGTTGTTTTGTTCTTCCACGGTAACGTGCTGTTAGTTGTGGTTGTGG 18663 | | |||||| | ||||| ||||||||| || || || ||||| ||||||||||| Sbjct 281 AAAGCTTAGGGAGTGTTGTAGAGTTCTTCCAAGGCAATGTCTGGTTAGCTGTGGTTGTGG 222 Query 18664 TATCTGTAGCAAATACGTAATTACGTAGTTC 18694 | || || ||||| ||||| ||||||| ||| Sbjct 221 TGTCAGTGGCAAAGACGTAGTTACGTAATTC 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161273155866460