Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5865 98.7 2e-15 >seq5865 Length=143300 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCT 206229 ||||| ||| || || ||||| || || || ||||| | || ||||| ||| Sbjct 26257 CAGATCTTTGTGAAGACCCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCAAGC--- 26201 Query 206230 GACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCT 206289 ||||| | || || ||| ||||| || || |||||||| ||| || ||| Sbjct 26200 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 26141 Query 206290 CAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || | |||||||| || |||||| |||||||||| | || || |||| |||||| Sbjct 26140 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 26081 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||||| ||||| ||||| || Sbjct 26080 ATCCAGAAAGAGTCCACTCTCCACCTGGT 26052 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || |||||||| ||| || ||| || || | |||||||| || ||| Sbjct 25720 AAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGTTGATCTTCGCTGGCAAG 25661 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || || |||| |||||| ||||||||||||| ||||| ||| Sbjct 25660 CAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACTCTCCAC 25601 Query 206374 CTTGT 206378 || || Sbjct 25600 CTGGT 25596 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || |||||||| ||| || ||| || || | |||||||| || ||| Sbjct 25948 AAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGTTGATCTTCGCTGGCAAG 25889 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| || || |||| |||||| ||||||||||||| ||||| ||| Sbjct 25888 CAGCTGGAAGATGGTCCAACCCTGTCCGACTACAACATCCAGAAAGAGTCCACTCTCCAC 25829 Query 206374 CTTGT 206378 || || Sbjct 25828 CTGGT 25824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181716092523715