Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq1950 123 7e-24 >seq1950 Length=44673 Score = 123 bits (136), Expect = 7e-24 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 233 ACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGC 292 || ||||| || ||||| |||| ||| | | || ||||| || |||||||||| | Sbjct 25126 ACAATTTCTGTAGTGTACTGATCTTGACCATCTTTGTTTTGCCATTTACGCGTTTGCAAC 25067 Query 293 GCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGC 352 || |||||| | || | ||||||||| ||||| | | ||| ||||| || ||| Sbjct 25066 TTACCCTCAATGTAAACTTGAGAGCCTTTGCGTAGGTATTCACCGGCAATTTCAGCTAGC 25007 Query 353 TTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTA 412 ||||| |||| | || ||||||||||| ||||||||||| | ||| || || | |||| Sbjct 25006 TTTCCAAAGACAGCAACACGGTGCCATTCTGTTTTTTCTTTTTGCTCGCCAGTGTTCTTA 24947 Query 413 TCCTTCCAGGTTTCAGACGTGGC 435 || |||||| |||| || || || Sbjct 24946 TCTTTCCAGCTTTCTGATGTTGC 24924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135390481412990