Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_025458.1 Length=43510 Score E Sequences producing significant alignments: (Bits) Value seq1950 284 3e-72 >seq1950 Length=44673 Score = 284 bits (314), Expect = 3e-72 Identities = 868/1334 (65%), Gaps = 42/1334 (3%) Strand=Plus/Plus Query 8294 TTACTTTGTTGATTTTGGCGGAAGGGGTGGCGGGAAGACCAAGGACAAGATCAAGGCCGT 8353 |||||| ||||||| || || | ||||| || ||||| ||||| ||||| || | || Sbjct 33348 TTACTTCGTTGATTACGGTGGTCGTGGTGGTGGTAAGACAAAGGATAAGATTAAATCGGT 33407 Query 8354 AGTTTTAGAATCAACTATTCGGCGCGTTCGCGTGCTTGTCACCCGTGAGTTTCAAGAGTC 8413 || | || || |||| |||| ||||| || | || || ||||| || || | || Sbjct 33408 CGTATATGAGGCATCTATACGGCCTGTTCGTGTTTTGGTTACTCGTGAATTACAGAACTC 33467 Query 8414 AATTAGCGAATCAGTAAAGGCTGAGATTGAAACGTGCATCGATGAATTAGACTTGG-GCC 8472 || |||||||||||||||||||| || || || |||| | |||| | | Sbjct 33468 TATCGAGGAATCAGTAAAGGCTGAGATAGAGGCGGTTATATTTGAAGAGGGTTTGGAGTC 33527 Query 8473 ACTTTTTCCGCATCACTGAGGACAAAATTGTTGCGCTTAATGGCAGTAAGTTTGTGTTTA 8532 | | ||| | || ||||| | ||||||| | ||||| | ||| | || Sbjct 33528 ATTCTTTAAG-ATAACTGAAAAGGCTATTGTTGGATTAAATGGATCAAGGTTCATCTTCC 33586 Query 8533 AGGGGTTAAAGAAGAATATCAACAATATTAAATCAATCGCTAACGTTGATATTGTGCTTG 8592 ||||||||||| || |||||||| | || || || ||| | ||||||||||| || | Sbjct 33587 GAGGGTTAAAGAATAACATCAACAACCTAAAGTCTATTGCTGATGTTGATATTGTACTGG 33646 Query 8593 TTGAAGAAGCTGAGAACGTGAGCGAAAACTCATGGGATAAGCTATTGCCATCTATTCGCC 8652 | ||||| || || ||||| | | |||||||| |||||||| ||||| ||||| | Sbjct 33647 TGGAAGAGGCAGAAAACGTAACTAAGGTTTCATGGGAAAAGCTATTACCATCCATTCGTC 33706 Query 8653 CGGTGTCGGGCCGCGCGATTGTCATTGTGATATTTAACCCGGCTAGCGAATTGGATGCAA 8712 | | || || || ||||||| || || || ||||| || | |||||||||| | Sbjct 33707 CTATCAGTGGTCGAGCTGTTGTCATAGTTATTTTCAACCCTGCAAATGAATTGGATGATA 33766 Query 8713 CCTGGCAAACATGGATTGTTAACACGCCGCTTCGAACGCTGCTTACTGAATGTAATTACC 8772 | | || ||||||| |||| || || | ||||| | || || | ||||| Sbjct 33767 CATATCAGCGATGGATTATTAATACACCACCAAGAACGTTACTAACCAAGGTTAATTGGT 33826 Query 8773 CTGATAACAAATATTTCCCTGCATTCTTGGAGGCGCAGCGCCTACATGACGAGCGGGTAT 8832 ||||||||||||| |||||||||||| | | | ||| | |||| | | |||| Sbjct 33827 CTGATAACAAATACTTCCCTGCATTCCTTAATGAGCAAAGATTACACCAACAAAAAGTAT 33886 Query 8833 TGCCA-CCTAAGCGCTACAAAAACAAATGGCTTGGTATTCCAGCAGGTAGCGAAGGCGAT 8891 | ||| || ||| | || || ||| ||| |||| || || || || || Sbjct 33887 TACCAGCCAAAGAG-TATGAACACATTTGGGAAGGTAAACCTATCGGATCTGAGGGTGAC 33945 Query 8892 ATTATTATTGATCAAGATTGGCTAAAGGCTGCACGCTTTGCTAGTCGTCATGCAGATTGG 8951 ||||| ||||||| |||||| | ||||| || | ||||| ||| ||| | || ||| Sbjct 33946 ATTATCATTGATCTCGATTGGATTAAGGCAGCTAGATTTGCAAGTAATCACCCTGAATGG 34005 Query 8952 GAAATAGTAGGTCCAAAGGTTGTCGCATACGATCCCGCAGGGCAAGGGAAAGATAGCCAT 9011 | | | || || ||| | || ||||| ||||| ||||| ||| || | Sbjct 34006 GTTAACGCTGGCGTTAAACGTGTTGGTTATGATCCAGCAGGACAAGGCCGAGACAGTAAC 34065 Query 9012 GCCGTTGCATACTCTAATGGCAATTGCGTTACTGAAATTGATGAGTGGCCATTATCACCA 9071 || || || | |||| || ||| | | |||| ||||||||||| |||||| Sbjct 34066 GCATGTGTATTTATTGATGGTAACTGCCTGATTGAAGTTGATGAGTGGGTTAAATCACCT 34125 Query 9072 GATTTGCGCGTAGCTACTAACCGCGCATTATCCATGGCTCGCAAGCATGAAGCTGATGAA 9131 || ||| | | |||||| | | || ||||| ||| | || ||| ||| | | Sbjct 34126 GACTTGAGAGAGGCTACTCGCAGAGCTTTATCTATGATTGATAAACATCGTGCTAACTCA 34185 Query 9132 TTTACCTATGATGAGTGTGGTGGTTTTGGTGATGGCGTGAGCGTATTTGCTAAAGATAAC 9191 || |||||||||||||| ||||| ||||| || || |||| |||||| | Sbjct 34186 TTCTATTATGATGAGTGTGGCGGTTTCGGTGACGGTGTTTCTATATTCATTAAAGACGAG 34245 Query 9192 GTTGAAGGCATTAGCACAGATGAAGATGGCGTAAACTTTGAAGAGTTTGATATTAATGTC 9251 ||| || || || ||| ||| | |||| | | ||||| | ||| Sbjct 34246 GTT----ACAAACGCCCA-ATG-GGATAG---TCACTTAG------TGAATATTGAGGTC 34290 Query 9252 ACGCCATTCAATGCCGGCGATTCAATCGAAAAACCAGAAGATTGGGATGAAAGCAAA--- 9308 | || || ||||| || ||| ||| || || || | | Sbjct 34291 AATCCGTTTAATGCTGG-------ATC-----ACC-------TGTTATCAATTCTGACTC 34331 Query 9309 -AAGATTAAGGGAACCGAGAAAACCCCTTATGAGATTTATTGCAATCAAAAAGCTCATGC 9367 | ||| | || || || || || ||| || ||| |||| ||| ||||| || Sbjct 34332 GATCATTGACGGCACTGACAAGACGTTCGGTGAAATGTATACCAATTCAAAGGCTCAGGC 34391 Query 9368 GCATGGTGTAGTGGCGCAACAGCTTTATAACACATACCGATTCATTGAACTTGGCGAGCG 9427 || | ||| |||||| || |||| || |||||||||||||| | || |||||||| Sbjct 34392 TCACGCAATAGCGGCGCAGAAGTTTTACAATACATACCGATTCATCAAGCTAGGCGAGCG 34451 Query 9428 TGGCATTGATTTTAATGAAATGCTTAGCCTGGACATTGAAGATGACGCTATGTGGAAAAA 9487 | |||| | | || ||| | || | ||||| || ||||| || | | ||| Sbjct 34452 AGACATTAACCCCGAGGACATGATAAGTATCGACATAGATGATGAAGCGTTATACCTAAA 34511 Query 9488 GATAATGCGCGAAATGTCTACGGCATTATGGGTTAAGTCTGAGTCTAACAGCAAAAAGAA 9547 || || ||||||||||| || ||||||||||| || || | ||||| || ||||| Sbjct 34512 ATTAGCCCGTGAAATGTCTACTGCCTTATGGGTTAAATCAGAAACAAACAGTAAGAAGAA 34571 Query 9548 AGTTGAAAGTAAAGAGAATATGAAGAATCGCACAGGGCAAGAATCGCCAAATATCAACGA 9607 ||| ||| |||| || ||||| | || || || || |||| ||||||||| |||||||| Sbjct 34572 AGTAGAATCTAAAAAGGATATGGAAAAGCGAACTGGACAAGCATCGCCAAACATCAACGA 34631 Query 9608 CGCAATCATTATGT 9621 | |||| |||| Sbjct 34632 TTCGGTCATAATGT 34645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139098976862560