Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq257 89.7 5e-13 >seq257 Length=13053552 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || || |||||||||||| | |||||| |||||| | ||| ||||||| Sbjct 5263117 GATTCCTTCTGGATGTTGTAGTCGGATAGGGTACGACCATCTTCCAACTGCTTACCGGCG 5263058 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| ||||| || ||||| || | Sbjct 5263057 AAGATCAGACGCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATTTTAGCCTTGACA 5262998 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | |||||||| || | || | || || |||||||| || || Sbjct 5262997 TTCTCAATAGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 5262938 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 5262937 ACGAAGATCTGCAT 5262924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476570002919400