Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq3456 100 9e-18 seq6558 98.7 3e-17 seq4219 98.7 3e-17 seq2204 98.7 3e-17 seq2048 98.7 3e-17 seq342 98.7 3e-17 seq4847 95.1 4e-16 seq1020 95.1 4e-16 seq1255 89.7 2e-14 >seq3456 Length=6199213 Score = 100 bits (110), Expect = 9e-18 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 2760 GTGTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCC 2818 ||||| || || ||| |||||||||||||||||| |||||||||||||||||||||||| Sbjct 963681 GTGTTCATCAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCC 963622 Query 2819 TGGTTCAACCCCGGGCTTCAGC 2840 |||||| | |||||| ||| || Sbjct 963621 TGGTTCGATCCCGGGTTTCGGC 963600 >seq6558 Length=5428992 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2334405 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2334464 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2334465 CCGGGTTTCGGC 2334476 >seq4219 Length=379329 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 51625 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 51566 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 51565 CCGGGTTTCGGC 51554 >seq2204 Length=200101 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 93046 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 93105 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 93106 CCGGGTTTCGGC 93117 >seq2048 Length=3398349 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 324204 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 324263 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 324264 CCGGGTTTCGGC 324275 >seq342 Length=1522529 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 669417 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 669358 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 669357 CCGGGTTTCGGC 669346 >seq4847 Length=2550865 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | | Sbjct 396014 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATC 396073 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 396074 CCGGGTTTCGGC 396085 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 400049 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 400108 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 400109 CCTGGTTTCGGC 400120 >seq1020 Length=509474 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | | Sbjct 365779 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATC 365838 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 365839 CCGGGTTTCGGC 365850 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||| ||||||||||| | | Sbjct 366687 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCTGGTTCGATC 366628 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 366627 CCGGGTTTCGGC 366616 >seq1255 Length=5157264 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||| |||||||| |||||||||||||||||||||||||||||| | | Sbjct 2467606 GCCGAAATAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2467665 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 2467666 CCTGGTTTCGGC 2467677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848401250175