Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Clupea_20harengus_20[refseq_20GCF_5F000966335.1_202015-03-30] 6,915 sequences; 807,711,962 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2049 190 2e-43 >seq2049 Length=84106 Score = 190 bits (210), Expect = 2e-43 Identities = 150/180 (83%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | |||||| | ||||||||||||||| | ||||||||| |||||||| Sbjct 10015 CTTGAGGCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 10074 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||| |||||||| ||||| | ||||||||| |||||||| ||||| ||||| Sbjct 10075 GGGCACGCCCAGACCCATGTCTCCCGATCGCTGGTACAGTTGGCACGACAGCTCACCGTC 10134 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 |||||||||||||||||| |||||||| ||||||||||| ||||||||| || Sbjct 10135 ACACACGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCTGC 10194 Score = 176 bits (194), Expect = 5e-39 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || | |||||| | ||||||||||||||| | ||||||||| |||||||| Sbjct 9496 CTTGAGTCCTGTGATGTGGGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAA 9555 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||| |||||||| |||| | ||||||||| |||||||| ||||| ||||| Sbjct 9556 GGGCACGCCCAGACCCATGTCTCCCGGTCGCTGGTACAGTTGGCACGACAGCTCACCGTC 9615 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 | |||||||||||||||| |||||||| ||||||||||| ||||||||| || Sbjct 9616 ACACGCGTAAAACTGGCACAGCGCATGGCACGGGGGCAGCGCCATCAGGGGCAGGTCTGC 9675 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 ||||| |||| |||||||||||||||||||||||||||||||| || || || |||| Sbjct 12667 GCCCCGTAGTGTCTCCACTGGAAGCCGTACACTGGCCCCAGGTCTCCCTCCTCTCGGTGC 12726 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 |||||| || | || || || | || |||| |||||||||||| ||| ||| Sbjct 12727 TGGAAGCCGCTGCGGTCCAGGAAGTCCCGAGAGCCGTTGGCGTCCCAGATCTTCACGCCC 12786 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGG 147438 || | || |||||||| | || ||||||||| || Sbjct 12787 TTCTCAGACAGCTCCTTGGCGTTGGTGGAGCCCTGG 12822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583437564756000